Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4458 and GFF4459 overlap by 8 nucleotides GFF4459 and GFF4460 are separated by 129 nucleotides GFF4460 and GFF4461 overlap by 4 nucleotides
GFF4458 - Transcriptional regulatory protein ZraR, at 36,944 to 38,356
GFF4458
GFF4459 - Adaptive-response sensory-kinase SasA, at 38,349 to 40,433
GFF4459
GFF4460 - hypothetical protein, at 40,563 to 40,748
GFF4460
GFF4461 - hypothetical protein, at 40,745 to 41,566
GFF4461
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -1
0
1 at 37.737 kb on - strand, within GFF4458 at 37.737 kb on - strand, within GFF4458 at 37.737 kb on - strand, within GFF4458 at 37.940 kb on + strand, within GFF4458 at 37.940 kb on + strand, within GFF4458 at 37.941 kb on - strand, within GFF4458 at 37.941 kb on - strand, within GFF4458 at 37.941 kb on - strand, within GFF4458 at 37.941 kb on - strand, within GFF4458 at 38.571 kb on + strand, within GFF4459 at 38.721 kb on + strand, within GFF4459 at 38.722 kb on - strand, within GFF4459 at 39.273 kb on + strand, within GFF4459 at 39.330 kb on + strand, within GFF4459 at 39.330 kb on + strand, within GFF4459 at 39.330 kb on + strand, within GFF4459 at 39.330 kb on + strand, within GFF4459 at 39.331 kb on - strand, within GFF4459 at 39.331 kb on - strand, within GFF4459 at 39.331 kb on - strand, within GFF4459 at 39.794 kb on - strand, within GFF4459 at 40.091 kb on + strand, within GFF4459 at 40.091 kb on + strand, within GFF4459 at 40.091 kb on + strand, within GFF4459 at 40.092 kb on - strand, within GFF4459 at 40.092 kb on - strand, within GFF4459 at 40.092 kb on - strand, within GFF4459 at 40.092 kb on - strand, within GFF4459 at 40.306 kb on - strand at 40.306 kb on - strand at 40.875 kb on - strand, within GFF4461 at 40.875 kb on - strand, within GFF4461 at 41.185 kb on - strand, within GFF4461 at 41.186 kb on + strand, within GFF4461 at 41.187 kb on - strand, within GFF4461 at 41.187 kb on - strand, within GFF4461 at 41.309 kb on + strand, within GFF4461 at 41.310 kb on - strand, within GFF4461 at 41.310 kb on - strand, within GFF4461
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 37,737 - GFF4458 0.56 -0.1 37,737 - GFF4458 0.56 +0.2 37,737 - GFF4458 0.56 -0.2 37,940 + GFF4458 0.70 -0.2 37,940 + GFF4458 0.70 -0.5 37,941 - GFF4458 0.71 -0.7 37,941 - GFF4458 0.71 -0.5 37,941 - GFF4458 0.71 +0.6 37,941 - GFF4458 0.71 -0.1 38,571 + GFF4459 0.11 -0.2 38,721 + GFF4459 0.18 -1.5 38,722 - GFF4459 0.18 -1.0 39,273 + GFF4459 0.44 +0.2 39,330 + GFF4459 0.47 -1.2 39,330 + GFF4459 0.47 -0.5 39,330 + GFF4459 0.47 +0.2 39,330 + GFF4459 0.47 -0.9 39,331 - GFF4459 0.47 +1.6 39,331 - GFF4459 0.47 +0.6 39,331 - GFF4459 0.47 -0.4 39,794 - GFF4459 0.69 +0.3 40,091 + GFF4459 0.84 +0.2 40,091 + GFF4459 0.84 -0.9 40,091 + GFF4459 0.84 +0.4 40,092 - GFF4459 0.84 -0.5 40,092 - GFF4459 0.84 +0.5 40,092 - GFF4459 0.84 +0.2 40,092 - GFF4459 0.84 +0.9 40,306 - -0.1 40,306 - -1.5 40,875 - GFF4461 0.16 +0.1 40,875 - GFF4461 0.16 -0.4 41,185 - GFF4461 0.54 +0.5 41,186 + GFF4461 0.54 +0.6 41,187 - GFF4461 0.54 +0.8 41,187 - GFF4461 0.54 +0.4 41,309 + GFF4461 0.69 +0.6 41,310 - GFF4461 0.69 +0.8 41,310 - GFF4461 0.69 +0.4
Or see this region's nucleotide sequence