Strain Fitness in Xanthobacter sp. DMC5 around GFF4417

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4416 and GFF4417 are separated by 133 nucleotidesGFF4417 and GFF4418 are separated by 2 nucleotidesGFF4418 and GFF4419 are separated by 7 nucleotides GFF4416 - Thiosulfate sulfurtransferase GlpE, at 223,425 to 224,222 GFF4416 GFF4417 - hypothetical protein, at 224,356 to 226,020 GFF4417 GFF4418 - hypothetical protein, at 226,023 to 226,460 GFF4418 GFF4419 - hypothetical protein, at 226,468 to 226,902 GFF4419 Position (kb) 224 225 226 227Strain fitness (log2 ratio) -2 -1 0 1 2 3at 223.453 kb on + strandat 223.597 kb on + strand, within GFF4416at 223.597 kb on + strand, within GFF4416at 223.597 kb on + strand, within GFF4416at 223.598 kb on - strand, within GFF4416at 223.598 kb on - strand, within GFF4416at 223.598 kb on - strand, within GFF4416at 223.598 kb on - strand, within GFF4416at 223.598 kb on - strand, within GFF4416at 223.598 kb on - strand, within GFF4416at 223.598 kb on - strand, within GFF4416at 223.598 kb on - strand, within GFF4416at 223.936 kb on + strand, within GFF4416at 223.937 kb on - strand, within GFF4416at 223.993 kb on + strand, within GFF4416at 223.994 kb on - strand, within GFF4416at 224.018 kb on - strand, within GFF4416at 224.023 kb on + strand, within GFF4416at 224.023 kb on + strand, within GFF4416at 224.023 kb on + strand, within GFF4416at 224.023 kb on + strand, within GFF4416at 224.023 kb on + strand, within GFF4416at 224.024 kb on - strand, within GFF4416at 224.024 kb on - strand, within GFF4416at 224.024 kb on - strand, within GFF4416at 224.024 kb on - strand, within GFF4416at 224.024 kb on - strand, within GFF4416at 224.301 kb on - strandat 224.432 kb on + strandat 224.432 kb on + strandat 224.432 kb on + strandat 224.433 kb on - strandat 224.433 kb on - strandat 224.433 kb on - strandat 224.468 kb on - strandat 224.540 kb on + strand, within GFF4417at 224.720 kb on + strand, within GFF4417at 224.826 kb on - strand, within GFF4417at 224.826 kb on - strand, within GFF4417at 224.951 kb on - strand, within GFF4417at 225.141 kb on - strand, within GFF4417at 225.437 kb on + strand, within GFF4417at 225.437 kb on + strand, within GFF4417at 225.608 kb on + strand, within GFF4417at 225.608 kb on + strand, within GFF4417at 225.609 kb on - strand, within GFF4417at 225.609 kb on - strand, within GFF4417at 225.609 kb on - strand, within GFF4417at 225.656 kb on + strand, within GFF4417at 225.656 kb on + strand, within GFF4417at 225.656 kb on + strand, within GFF4417at 225.657 kb on - strand, within GFF4417at 225.657 kb on - strand, within GFF4417at 225.657 kb on - strand, within GFF4417at 225.657 kb on - strand, within GFF4417at 225.666 kb on + strand, within GFF4417at 225.881 kb on + strandat 225.882 kb on - strandat 225.938 kb on + strandat 225.939 kb on - strandat 225.972 kb on - strandat 225.972 kb on - strandat 226.097 kb on + strand, within GFF4418at 226.098 kb on - strand, within GFF4418at 226.469 kb on + strandat 226.697 kb on + strand, within GFF4419at 226.757 kb on + strand, within GFF4419at 226.757 kb on + strand, within GFF4419at 226.758 kb on - strand, within GFF4419at 226.758 kb on - strand, within GFF4419at 226.758 kb on - strand, within GFF4419at 226.758 kb on - strand, within GFF4419at 226.758 kb on - strand, within GFF4419at 226.758 kb on - strand, within GFF4419at 226.758 kb on - strand, within GFF4419at 226.919 kb on + strandat 226.919 kb on + strandat 226.919 kb on + strandat 226.920 kb on - strandat 226.920 kb on - strandat 226.920 kb on - strandat 226.920 kb on - strandat 226.929 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
223,453 + +0.3
223,597 + GFF4416 0.22 +0.2
223,597 + GFF4416 0.22 +0.2
223,597 + GFF4416 0.22 +0.6
223,598 - GFF4416 0.22 +0.1
223,598 - GFF4416 0.22 -0.1
223,598 - GFF4416 0.22 -0.2
223,598 - GFF4416 0.22 -0.4
223,598 - GFF4416 0.22 -0.5
223,598 - GFF4416 0.22 -0.3
223,598 - GFF4416 0.22 -0.5
223,598 - GFF4416 0.22 +0.5
223,936 + GFF4416 0.64 -0.4
223,937 - GFF4416 0.64 -0.8
223,993 + GFF4416 0.71 -0.4
223,994 - GFF4416 0.71 -0.0
224,018 - GFF4416 0.74 +1.4
224,023 + GFF4416 0.75 -0.2
224,023 + GFF4416 0.75 +0.2
224,023 + GFF4416 0.75 +0.6
224,023 + GFF4416 0.75 +0.0
224,023 + GFF4416 0.75 -1.0
224,024 - GFF4416 0.75 -0.2
224,024 - GFF4416 0.75 -1.2
224,024 - GFF4416 0.75 +0.0
224,024 - GFF4416 0.75 +0.2
224,024 - GFF4416 0.75 -0.1
224,301 - -0.5
224,432 + +0.2
224,432 + +0.7
224,432 + +0.3
224,433 - -1.1
224,433 - -0.4
224,433 - +0.5
224,468 - +0.0
224,540 + GFF4417 0.11 -1.2
224,720 + GFF4417 0.22 -0.2
224,826 - GFF4417 0.28 -1.1
224,826 - GFF4417 0.28 +0.5
224,951 - GFF4417 0.36 +1.0
225,141 - GFF4417 0.47 -0.4
225,437 + GFF4417 0.65 -0.8
225,437 + GFF4417 0.65 -0.8
225,608 + GFF4417 0.75 +0.2
225,608 + GFF4417 0.75 +0.4
225,609 - GFF4417 0.75 -0.8
225,609 - GFF4417 0.75 -1.3
225,609 - GFF4417 0.75 -0.2
225,656 + GFF4417 0.78 -1.0
225,656 + GFF4417 0.78 +0.4
225,656 + GFF4417 0.78 +0.2
225,657 - GFF4417 0.78 +1.1
225,657 - GFF4417 0.78 -0.1
225,657 - GFF4417 0.78 +1.0
225,657 - GFF4417 0.78 +0.9
225,666 + GFF4417 0.79 -0.5
225,881 + +0.2
225,882 - -0.2
225,938 + +0.5
225,939 - -0.4
225,972 - +0.3
225,972 - -0.5
226,097 + GFF4418 0.17 -0.8
226,098 - GFF4418 0.17 +0.2
226,469 + +0.2
226,697 + GFF4419 0.53 -0.7
226,757 + GFF4419 0.66 -0.6
226,757 + GFF4419 0.66 -1.8
226,758 - GFF4419 0.67 -0.5
226,758 - GFF4419 0.67 -0.5
226,758 - GFF4419 0.67 -0.2
226,758 - GFF4419 0.67 +0.7
226,758 - GFF4419 0.67 -0.5
226,758 - GFF4419 0.67 -0.3
226,758 - GFF4419 0.67 -0.4
226,919 + +0.9
226,919 + +0.2
226,919 + +2.8
226,920 - +0.1
226,920 - -0.1
226,920 - -0.0
226,920 - +1.3
226,929 + +0.8

Or see this region's nucleotide sequence