Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF439 and GFF440 are separated by 173 nucleotides GFF440 and GFF441 are separated by 299 nucleotides GFF441 and GFF442 are separated by 41 nucleotides
GFF439 - Aminodeoxychorismate synthase component 1, at 462,184 to 463,587
GFF439
GFF440 - hypothetical protein, at 463,761 to 464,120
GFF440
GFF441 - hypothetical protein, at 464,420 to 464,794
GFF441
GFF442 - hypothetical protein, at 464,836 to 466,338
GFF442
Position (kb) 464
465 Strain fitness (log2 ratio) -1
0
1 at 463.448 kb on + strand at 463.449 kb on - strand at 463.466 kb on + strand at 463.467 kb on - strand at 463.467 kb on - strand at 464.183 kb on + strand at 464.507 kb on + strand, within GFF441 at 464.507 kb on + strand, within GFF441 at 464.663 kb on + strand, within GFF441 at 464.664 kb on - strand, within GFF441 at 464.735 kb on + strand, within GFF441 at 464.736 kb on - strand, within GFF441 at 464.736 kb on - strand, within GFF441 at 464.849 kb on + strand at 464.850 kb on - strand at 464.927 kb on + strand at 464.928 kb on - strand at 464.978 kb on + strand at 464.979 kb on - strand at 465.063 kb on + strand, within GFF442 at 465.064 kb on - strand, within GFF442 at 465.065 kb on + strand, within GFF442 at 465.065 kb on + strand, within GFF442 at 465.128 kb on + strand, within GFF442 at 465.314 kb on + strand, within GFF442 at 465.335 kb on + strand, within GFF442 at 465.335 kb on + strand, within GFF442 at 465.336 kb on - strand, within GFF442 at 465.336 kb on - strand, within GFF442 at 465.356 kb on + strand, within GFF442 at 465.356 kb on + strand, within GFF442 at 465.431 kb on + strand, within GFF442 at 465.431 kb on + strand, within GFF442 at 465.432 kb on - strand, within GFF442 at 465.432 kb on - strand, within GFF442 at 465.432 kb on - strand, within GFF442 at 465.432 kb on - strand, within GFF442 at 465.432 kb on - strand, within GFF442 at 465.573 kb on + strand, within GFF442 at 465.574 kb on - strand, within GFF442 at 465.574 kb on - strand, within GFF442
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 463,448 + -1.1 463,449 - -0.1 463,466 + -0.3 463,467 - +0.4 463,467 - -0.7 464,183 + -0.3 464,507 + GFF441 0.23 -0.4 464,507 + GFF441 0.23 +1.0 464,663 + GFF441 0.65 -0.5 464,664 - GFF441 0.65 +0.4 464,735 + GFF441 0.84 +0.9 464,736 - GFF441 0.84 +0.3 464,736 - GFF441 0.84 -1.2 464,849 + +0.4 464,850 - -0.7 464,927 + +0.9 464,928 - -0.5 464,978 + +1.0 464,979 - -0.3 465,063 + GFF442 0.15 -0.5 465,064 - GFF442 0.15 -0.3 465,065 + GFF442 0.15 +0.1 465,065 + GFF442 0.15 -0.2 465,128 + GFF442 0.19 +0.4 465,314 + GFF442 0.32 -0.1 465,335 + GFF442 0.33 +0.9 465,335 + GFF442 0.33 -0.3 465,336 - GFF442 0.33 -0.4 465,336 - GFF442 0.33 -0.2 465,356 + GFF442 0.35 +0.9 465,356 + GFF442 0.35 +1.0 465,431 + GFF442 0.40 -0.1 465,431 + GFF442 0.40 +0.7 465,432 - GFF442 0.40 -0.4 465,432 - GFF442 0.40 -0.9 465,432 - GFF442 0.40 -0.1 465,432 - GFF442 0.40 -0.2 465,432 - GFF442 0.40 +0.2 465,573 + GFF442 0.49 -0.1 465,574 - GFF442 0.49 +0.7 465,574 - GFF442 0.49 +0.3
Or see this region's nucleotide sequence