Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4399 and GFF4400 are separated by 121 nucleotides GFF4400 and GFF4401 are separated by 24 nucleotides GFF4401 and GFF4402 are separated by 104 nucleotides GFF4402 and GFF4403 are separated by 108 nucleotides GFF4403 and GFF4404 are separated by 156 nucleotides
GFF4399 - hypothetical protein, at 202,821 to 205,457
GFF4399
GFF4400 - hypothetical protein, at 205,579 to 206,118
GFF4400
GFF4401 - hypothetical protein, at 206,143 to 207,087
GFF4401
GFF4402 - hypothetical protein, at 207,192 to 207,638
GFF4402
GFF4403 - hypothetical protein, at 207,747 to 207,884
GFF4403
GFF4404 - Dihydrolipoyl dehydrogenase 3, at 208,041 to 209,444
GFF4404
Position (kb) 206
207
208 Strain fitness (log2 ratio) -2
-1
0
1 at 205.146 kb on + strand, within GFF4399 at 205.146 kb on + strand, within GFF4399 at 205.146 kb on + strand, within GFF4399 at 205.147 kb on - strand, within GFF4399 at 205.147 kb on - strand, within GFF4399 at 205.147 kb on - strand, within GFF4399 at 205.147 kb on - strand, within GFF4399 at 205.239 kb on - strand at 205.302 kb on + strand at 205.303 kb on - strand at 205.303 kb on - strand at 205.303 kb on - strand at 205.303 kb on - strand at 205.455 kb on + strand at 205.456 kb on - strand at 205.456 kb on - strand at 205.456 kb on - strand at 205.690 kb on + strand, within GFF4400 at 205.691 kb on - strand, within GFF4400 at 205.691 kb on - strand, within GFF4400 at 205.713 kb on + strand, within GFF4400 at 205.713 kb on + strand, within GFF4400 at 205.714 kb on - strand, within GFF4400 at 205.945 kb on + strand, within GFF4400 at 205.946 kb on - strand, within GFF4400 at 206.065 kb on + strand at 206.065 kb on + strand at 206.065 kb on + strand at 206.065 kb on + strand at 206.066 kb on - strand at 206.066 kb on - strand at 206.066 kb on - strand at 206.066 kb on - strand at 206.074 kb on + strand at 206.075 kb on - strand at 206.075 kb on - strand at 206.174 kb on + strand at 206.382 kb on + strand, within GFF4401 at 206.382 kb on + strand, within GFF4401 at 206.382 kb on + strand, within GFF4401 at 206.382 kb on + strand, within GFF4401 at 206.383 kb on - strand, within GFF4401 at 206.384 kb on + strand, within GFF4401 at 206.385 kb on - strand, within GFF4401 at 206.410 kb on - strand, within GFF4401 at 206.426 kb on + strand, within GFF4401 at 206.426 kb on + strand, within GFF4401 at 206.435 kb on + strand, within GFF4401 at 206.531 kb on + strand, within GFF4401 at 206.532 kb on - strand, within GFF4401 at 206.532 kb on - strand, within GFF4401 at 206.942 kb on - strand, within GFF4401 at 207.005 kb on + strand at 207.006 kb on - strand at 207.213 kb on + strand at 207.213 kb on + strand at 207.214 kb on - strand at 207.304 kb on - strand, within GFF4402 at 207.328 kb on + strand, within GFF4402 at 207.423 kb on + strand, within GFF4402 at 207.423 kb on + strand, within GFF4402 at 207.424 kb on - strand, within GFF4402 at 207.481 kb on - strand, within GFF4402 at 207.481 kb on - strand, within GFF4402 at 207.578 kb on + strand, within GFF4402 at 207.592 kb on + strand, within GFF4402 at 207.607 kb on + strand at 207.608 kb on - strand at 207.636 kb on + strand at 207.637 kb on - strand at 207.720 kb on + strand at 207.721 kb on - strand at 207.721 kb on - strand at 207.721 kb on - strand at 207.721 kb on - strand at 207.721 kb on - strand at 207.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 205,146 + GFF4399 0.88 -0.5 205,146 + GFF4399 0.88 -2.0 205,146 + GFF4399 0.88 -1.8 205,147 - GFF4399 0.88 -1.4 205,147 - GFF4399 0.88 -1.6 205,147 - GFF4399 0.88 -0.9 205,147 - GFF4399 0.88 -2.2 205,239 - -1.3 205,302 + -0.8 205,303 - -0.2 205,303 - -1.5 205,303 - -0.9 205,303 - -0.8 205,455 + -0.1 205,456 - -0.6 205,456 - +0.8 205,456 - +0.7 205,690 + GFF4400 0.21 -0.4 205,691 - GFF4400 0.21 -0.6 205,691 - GFF4400 0.21 -1.2 205,713 + GFF4400 0.25 +0.2 205,713 + GFF4400 0.25 -1.3 205,714 - GFF4400 0.25 -0.3 205,945 + GFF4400 0.68 +0.9 205,946 - GFF4400 0.68 -0.5 206,065 + +0.6 206,065 + -0.0 206,065 + +0.9 206,065 + +0.1 206,066 - -0.1 206,066 - +0.6 206,066 - -0.7 206,066 - +1.6 206,074 + +0.6 206,075 - +0.4 206,075 - +0.6 206,174 + -0.4 206,382 + GFF4401 0.25 +0.6 206,382 + GFF4401 0.25 +0.5 206,382 + GFF4401 0.25 +0.2 206,382 + GFF4401 0.25 -0.3 206,383 - GFF4401 0.25 +0.2 206,384 + GFF4401 0.26 -0.1 206,385 - GFF4401 0.26 -0.5 206,410 - GFF4401 0.28 +0.2 206,426 + GFF4401 0.30 -0.2 206,426 + GFF4401 0.30 -0.9 206,435 + GFF4401 0.31 +1.1 206,531 + GFF4401 0.41 +0.1 206,532 - GFF4401 0.41 -0.3 206,532 - GFF4401 0.41 +0.5 206,942 - GFF4401 0.85 -0.5 207,005 + +0.0 207,006 - -1.0 207,213 + +0.4 207,213 + -0.5 207,214 - +0.2 207,304 - GFF4402 0.25 -1.3 207,328 + GFF4402 0.30 -0.0 207,423 + GFF4402 0.52 -0.2 207,423 + GFF4402 0.52 -0.3 207,424 - GFF4402 0.52 +0.8 207,481 - GFF4402 0.65 +0.2 207,481 - GFF4402 0.65 +0.3 207,578 + GFF4402 0.86 -0.5 207,592 + GFF4402 0.89 +1.4 207,607 + -0.4 207,608 - +0.8 207,636 + +0.5 207,637 - +0.0 207,720 + -0.2 207,721 - -0.3 207,721 - -0.2 207,721 - +0.2 207,721 - -0.5 207,721 - -0.4 207,960 - +1.7
Or see this region's nucleotide sequence