Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4393 and GFF4394 are separated by 193 nucleotides GFF4394 and GFF4395 are separated by 175 nucleotides
GFF4393 - hypothetical protein, at 193,104 to 194,144
GFF4393
GFF4394 - hypothetical protein, at 194,338 to 197,817
GFF4394
GFF4395 - UTP--glucose-1-phosphate uridylyltransferase, at 197,993 to 198,880
GFF4395
Position (kb) 194
195
196
197
198 Strain fitness (log2 ratio) -2
-1
0
1 at 193.350 kb on + strand, within GFF4393 at 193.485 kb on + strand, within GFF4393 at 193.485 kb on + strand, within GFF4393 at 193.485 kb on + strand, within GFF4393 at 193.654 kb on - strand, within GFF4393 at 193.680 kb on + strand, within GFF4393 at 193.986 kb on + strand, within GFF4393 at 193.987 kb on - strand, within GFF4393 at 194.113 kb on - strand at 194.371 kb on + strand at 194.371 kb on + strand at 194.371 kb on + strand at 194.371 kb on + strand at 194.372 kb on - strand at 194.372 kb on - strand at 194.372 kb on - strand at 194.479 kb on + strand at 194.650 kb on + strand at 194.650 kb on + strand at 194.651 kb on - strand at 194.674 kb on + strand at 194.890 kb on + strand, within GFF4394 at 194.890 kb on + strand, within GFF4394 at 194.890 kb on + strand, within GFF4394 at 194.890 kb on + strand, within GFF4394 at 195.200 kb on - strand, within GFF4394 at 195.400 kb on + strand, within GFF4394 at 195.527 kb on - strand, within GFF4394 at 195.622 kb on + strand, within GFF4394 at 195.683 kb on - strand, within GFF4394 at 195.703 kb on + strand, within GFF4394 at 195.704 kb on - strand, within GFF4394 at 195.832 kb on + strand, within GFF4394 at 195.833 kb on - strand, within GFF4394 at 195.833 kb on - strand, within GFF4394 at 195.833 kb on - strand, within GFF4394 at 195.847 kb on + strand, within GFF4394 at 195.892 kb on + strand, within GFF4394 at 195.893 kb on - strand, within GFF4394 at 195.893 kb on - strand, within GFF4394 at 196.141 kb on + strand, within GFF4394 at 196.141 kb on + strand, within GFF4394 at 196.142 kb on - strand, within GFF4394 at 196.142 kb on - strand, within GFF4394 at 196.483 kb on + strand, within GFF4394 at 196.484 kb on - strand, within GFF4394 at 196.484 kb on - strand, within GFF4394 at 196.622 kb on - strand, within GFF4394 at 196.822 kb on + strand, within GFF4394 at 196.960 kb on + strand, within GFF4394 at 196.960 kb on + strand, within GFF4394 at 196.960 kb on + strand, within GFF4394 at 196.961 kb on - strand, within GFF4394 at 197.227 kb on + strand, within GFF4394 at 197.227 kb on + strand, within GFF4394 at 197.317 kb on + strand, within GFF4394 at 197.318 kb on - strand, within GFF4394 at 197.332 kb on + strand, within GFF4394 at 197.333 kb on - strand, within GFF4394 at 197.344 kb on + strand, within GFF4394 at 197.572 kb on + strand at 197.615 kb on - strand at 197.615 kb on - strand at 197.971 kb on + strand at 197.973 kb on + strand at 197.974 kb on - strand at 197.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 193,350 + GFF4393 0.24 +0.6 193,485 + GFF4393 0.37 -0.4 193,485 + GFF4393 0.37 -0.6 193,485 + GFF4393 0.37 +0.2 193,654 - GFF4393 0.53 +0.7 193,680 + GFF4393 0.55 -0.4 193,986 + GFF4393 0.85 +1.0 193,987 - GFF4393 0.85 -0.4 194,113 - -1.8 194,371 + -0.4 194,371 + +0.1 194,371 + -0.4 194,371 + +0.1 194,372 - -0.5 194,372 - +0.5 194,372 - -0.3 194,479 + -0.4 194,650 + +0.0 194,650 + -1.3 194,651 - +0.6 194,674 + -0.7 194,890 + GFF4394 0.16 +0.8 194,890 + GFF4394 0.16 -1.5 194,890 + GFF4394 0.16 -0.3 194,890 + GFF4394 0.16 +0.7 195,200 - GFF4394 0.25 +0.4 195,400 + GFF4394 0.31 -0.5 195,527 - GFF4394 0.34 -1.0 195,622 + GFF4394 0.37 +0.1 195,683 - GFF4394 0.39 -0.5 195,703 + GFF4394 0.39 -0.1 195,704 - GFF4394 0.39 -0.2 195,832 + GFF4394 0.43 -1.4 195,833 - GFF4394 0.43 -0.5 195,833 - GFF4394 0.43 -0.4 195,833 - GFF4394 0.43 -1.5 195,847 + GFF4394 0.43 -1.3 195,892 + GFF4394 0.45 +0.5 195,893 - GFF4394 0.45 +0.6 195,893 - GFF4394 0.45 -0.7 196,141 + GFF4394 0.52 +0.4 196,141 + GFF4394 0.52 -0.5 196,142 - GFF4394 0.52 -0.1 196,142 - GFF4394 0.52 +0.1 196,483 + GFF4394 0.62 +0.5 196,484 - GFF4394 0.62 +0.3 196,484 - GFF4394 0.62 +0.6 196,622 - GFF4394 0.66 -0.5 196,822 + GFF4394 0.71 +0.3 196,960 + GFF4394 0.75 -0.2 196,960 + GFF4394 0.75 +0.4 196,960 + GFF4394 0.75 -0.3 196,961 - GFF4394 0.75 +0.5 197,227 + GFF4394 0.83 +1.2 197,227 + GFF4394 0.83 -2.1 197,317 + GFF4394 0.86 -1.8 197,318 - GFF4394 0.86 -0.5 197,332 + GFF4394 0.86 -0.2 197,333 - GFF4394 0.86 +0.1 197,344 + GFF4394 0.86 +1.4 197,572 + +0.2 197,615 - -1.5 197,615 - -1.0 197,971 + +0.2 197,973 + -0.5 197,974 - +0.4 197,974 - +0.0
Or see this region's nucleotide sequence