Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF437 and GFF438 are separated by 10 nucleotides GFF438 and GFF439 overlap by 4 nucleotides GFF439 and GFF440 are separated by 173 nucleotides GFF440 and GFF441 are separated by 299 nucleotides
GFF437 - Acetyltransferase, at 460,831 to 461,385
GFF437
GFF438 - D-alanine aminotransferase, at 461,396 to 462,187
GFF438
GFF439 - Aminodeoxychorismate synthase component 1, at 462,184 to 463,587
GFF439
GFF440 - hypothetical protein, at 463,761 to 464,120
GFF440
GFF441 - hypothetical protein, at 464,420 to 464,794
GFF441
Position (kb) 462
463
464 Strain fitness (log2 ratio) -1
0
1 at 461.438 kb on + strand at 461.439 kb on - strand at 461.439 kb on - strand at 461.620 kb on + strand, within GFF438 at 461.621 kb on - strand, within GFF438 at 461.621 kb on - strand, within GFF438 at 461.621 kb on - strand, within GFF438 at 461.625 kb on - strand, within GFF438 at 461.625 kb on - strand, within GFF438 at 461.633 kb on + strand, within GFF438 at 461.633 kb on + strand, within GFF438 at 461.751 kb on + strand, within GFF438 at 461.752 kb on - strand, within GFF438 at 462.017 kb on + strand, within GFF438 at 462.245 kb on + strand at 462.245 kb on + strand at 462.245 kb on + strand at 462.245 kb on + strand at 462.246 kb on - strand at 462.386 kb on + strand, within GFF439 at 462.387 kb on - strand, within GFF439 at 462.387 kb on - strand, within GFF439 at 462.872 kb on + strand, within GFF439 at 462.872 kb on + strand, within GFF439 at 462.873 kb on - strand, within GFF439 at 462.873 kb on - strand, within GFF439 at 462.957 kb on + strand, within GFF439 at 462.958 kb on - strand, within GFF439 at 462.958 kb on - strand, within GFF439 at 462.958 kb on - strand, within GFF439 at 462.959 kb on + strand, within GFF439 at 462.959 kb on + strand, within GFF439 at 463.143 kb on + strand, within GFF439 at 463.197 kb on - strand, within GFF439 at 463.197 kb on - strand, within GFF439 at 463.404 kb on + strand, within GFF439 at 463.448 kb on + strand at 463.449 kb on - strand at 463.466 kb on + strand at 463.467 kb on - strand at 463.467 kb on - strand at 464.183 kb on + strand at 464.507 kb on + strand, within GFF441 at 464.507 kb on + strand, within GFF441
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 461,438 + -0.7 461,439 - +0.4 461,439 - +0.3 461,620 + GFF438 0.28 -0.7 461,621 - GFF438 0.28 -0.1 461,621 - GFF438 0.28 -0.9 461,621 - GFF438 0.28 +0.0 461,625 - GFF438 0.29 -0.4 461,625 - GFF438 0.29 -0.2 461,633 + GFF438 0.30 +0.7 461,633 + GFF438 0.30 -0.7 461,751 + GFF438 0.45 -1.1 461,752 - GFF438 0.45 -0.6 462,017 + GFF438 0.78 +0.3 462,245 + +0.1 462,245 + +0.5 462,245 + +0.1 462,245 + +0.1 462,246 - -0.3 462,386 + GFF439 0.14 -0.3 462,387 - GFF439 0.14 -0.6 462,387 - GFF439 0.14 -0.4 462,872 + GFF439 0.49 -0.4 462,872 + GFF439 0.49 -0.8 462,873 - GFF439 0.49 -0.4 462,873 - GFF439 0.49 +0.0 462,957 + GFF439 0.55 +0.7 462,958 - GFF439 0.55 +0.7 462,958 - GFF439 0.55 -0.2 462,958 - GFF439 0.55 -0.4 462,959 + GFF439 0.55 +0.0 462,959 + GFF439 0.55 +0.1 463,143 + GFF439 0.68 -0.8 463,197 - GFF439 0.72 -0.3 463,197 - GFF439 0.72 +0.3 463,404 + GFF439 0.87 -0.8 463,448 + -1.1 463,449 - -0.1 463,466 + -0.3 463,467 - +0.4 463,467 - -0.7 464,183 + -0.3 464,507 + GFF441 0.23 -0.4 464,507 + GFF441 0.23 +1.0
Or see this region's nucleotide sequence