Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4381 and GFF4382 are separated by 23 nucleotides GFF4382 and GFF4383 are separated by 52 nucleotides
GFF4381 - putative ABC transporter permease, at 170,340 to 171,485
GFF4381
GFF4382 - Macrolide export protein MacA, at 171,509 to 172,699
GFF4382
GFF4383 - L-threonine 3-dehydrogenase, at 172,752 to 181,994
GFF4383
Position (kb) 171
172
173 Strain fitness (log2 ratio) -1
0
1 at 170.516 kb on - strand, within GFF4381 at 170.516 kb on - strand, within GFF4381 at 170.632 kb on + strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.633 kb on - strand, within GFF4381 at 170.725 kb on - strand, within GFF4381 at 170.932 kb on + strand, within GFF4381 at 171.013 kb on + strand, within GFF4381 at 171.014 kb on - strand, within GFF4381 at 171.082 kb on + strand, within GFF4381 at 171.083 kb on - strand, within GFF4381 at 171.191 kb on + strand, within GFF4381 at 171.191 kb on + strand, within GFF4381 at 171.191 kb on + strand, within GFF4381 at 171.192 kb on - strand, within GFF4381 at 171.192 kb on - strand, within GFF4381 at 171.192 kb on - strand, within GFF4381 at 171.192 kb on - strand, within GFF4381 at 171.193 kb on + strand, within GFF4381 at 171.194 kb on - strand, within GFF4381 at 171.206 kb on - strand, within GFF4381 at 171.549 kb on + strand at 171.550 kb on - strand at 172.263 kb on + strand, within GFF4382 at 172.263 kb on + strand, within GFF4382 at 172.264 kb on - strand, within GFF4382 at 172.264 kb on - strand, within GFF4382 at 172.264 kb on - strand, within GFF4382 at 172.268 kb on + strand, within GFF4382 at 172.269 kb on - strand, within GFF4382 at 172.269 kb on - strand, within GFF4382 at 172.269 kb on - strand, within GFF4382 at 172.269 kb on - strand, within GFF4382 at 172.269 kb on - strand, within GFF4382 at 172.269 kb on - strand, within GFF4382 at 172.269 kb on - strand, within GFF4382 at 172.581 kb on + strand at 172.581 kb on + strand at 172.581 kb on + strand at 172.581 kb on + strand at 172.582 kb on - strand at 172.582 kb on - strand at 172.717 kb on + strand at 172.717 kb on + strand at 172.717 kb on + strand at 172.718 kb on - strand at 172.736 kb on - strand at 172.736 kb on - strand at 172.943 kb on - strand at 173.077 kb on + strand at 173.155 kb on + strand at 173.156 kb on - strand at 173.545 kb on + strand at 173.546 kb on - strand at 173.546 kb on - strand at 173.560 kb on + strand at 173.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 170,516 - GFF4381 0.15 +0.5 170,516 - GFF4381 0.15 -1.0 170,632 + GFF4381 0.25 -0.8 170,633 - GFF4381 0.26 -0.4 170,633 - GFF4381 0.26 +1.1 170,633 - GFF4381 0.26 +0.5 170,633 - GFF4381 0.26 -0.3 170,633 - GFF4381 0.26 -0.0 170,633 - GFF4381 0.26 -0.1 170,633 - GFF4381 0.26 +1.5 170,725 - GFF4381 0.34 +0.5 170,932 + GFF4381 0.52 +0.9 171,013 + GFF4381 0.59 +1.1 171,014 - GFF4381 0.59 +0.1 171,082 + GFF4381 0.65 -0.4 171,083 - GFF4381 0.65 +0.2 171,191 + GFF4381 0.74 -0.6 171,191 + GFF4381 0.74 +0.4 171,191 + GFF4381 0.74 +0.0 171,192 - GFF4381 0.74 +0.2 171,192 - GFF4381 0.74 +0.2 171,192 - GFF4381 0.74 +0.6 171,192 - GFF4381 0.74 +0.3 171,193 + GFF4381 0.74 +0.0 171,194 - GFF4381 0.75 -1.1 171,206 - GFF4381 0.76 +1.6 171,549 + -0.1 171,550 - +0.7 172,263 + GFF4382 0.63 +0.2 172,263 + GFF4382 0.63 +0.4 172,264 - GFF4382 0.63 +0.8 172,264 - GFF4382 0.63 +0.1 172,264 - GFF4382 0.63 +0.9 172,268 + GFF4382 0.64 +0.2 172,269 - GFF4382 0.64 +0.6 172,269 - GFF4382 0.64 +0.4 172,269 - GFF4382 0.64 +1.2 172,269 - GFF4382 0.64 -0.8 172,269 - GFF4382 0.64 +0.3 172,269 - GFF4382 0.64 -0.3 172,269 - GFF4382 0.64 +0.2 172,581 + +0.4 172,581 + -0.4 172,581 + -0.9 172,581 + +0.4 172,582 - +0.7 172,582 - -0.7 172,717 + +0.7 172,717 + -0.3 172,717 + -0.5 172,718 - -0.2 172,736 - +0.2 172,736 - +0.4 172,943 - +0.0 173,077 + -0.7 173,155 + +0.4 173,156 - -0.9 173,545 + +0.5 173,546 - +0.1 173,546 - +0.9 173,560 + -0.7 173,617 + +0.1
Or see this region's nucleotide sequence