Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4341 and GFF4342 are separated by 112 nucleotides GFF4342 and GFF4343 are separated by 13 nucleotides GFF4343 and GFF4344 are separated by 95 nucleotides
GFF4341 - hypothetical protein, at 124,138 to 124,848
GFF4341
GFF4342 - Peptidoglycan-associated lipoprotein, at 124,961 to 125,566
GFF4342
GFF4343 - hypothetical protein, at 125,580 to 126,014
GFF4343
GFF4344 - Bicyclomycin resistance protein, at 126,110 to 127,456
GFF4344
Position (kb) 125
126
127 Strain fitness (log2 ratio) -1
0
1
2 at 125.205 kb on + strand, within GFF4342 at 125.206 kb on - strand, within GFF4342 at 125.372 kb on - strand, within GFF4342 at 125.373 kb on + strand, within GFF4342 at 125.374 kb on - strand, within GFF4342 at 125.593 kb on + strand at 125.593 kb on + strand at 125.594 kb on - strand at 125.699 kb on - strand, within GFF4343 at 125.836 kb on + strand, within GFF4343 at 125.837 kb on - strand, within GFF4343 at 126.014 kb on + strand at 126.014 kb on + strand at 126.014 kb on + strand at 126.014 kb on + strand at 126.014 kb on + strand at 126.014 kb on + strand at 126.014 kb on + strand at 126.015 kb on - strand at 126.015 kb on - strand at 126.015 kb on - strand at 126.015 kb on - strand at 126.108 kb on - strand at 126.126 kb on + strand at 126.127 kb on - strand at 126.127 kb on - strand at 126.735 kb on + strand, within GFF4344 at 126.736 kb on - strand, within GFF4344 at 126.807 kb on + strand, within GFF4344 at 126.807 kb on + strand, within GFF4344
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 125,205 + GFF4342 0.40 +0.7 125,206 - GFF4342 0.40 -0.1 125,372 - GFF4342 0.68 +1.6 125,373 + GFF4342 0.68 -0.6 125,374 - GFF4342 0.68 -0.8 125,593 + -0.9 125,593 + -0.8 125,594 - +0.3 125,699 - GFF4343 0.27 -1.5 125,836 + GFF4343 0.59 -0.4 125,837 - GFF4343 0.59 +0.0 126,014 + +0.4 126,014 + -0.9 126,014 + +0.1 126,014 + +0.5 126,014 + +1.2 126,014 + -0.8 126,014 + -0.1 126,015 - -0.4 126,015 - -0.1 126,015 - -0.9 126,015 - -0.2 126,108 - +1.1 126,126 + -0.4 126,127 - -0.6 126,127 - -0.6 126,735 + GFF4344 0.46 -1.0 126,736 - GFF4344 0.46 -0.4 126,807 + GFF4344 0.52 +0.4 126,807 + GFF4344 0.52 +2.4
Or see this region's nucleotide sequence