Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4309 and GFF4310 are separated by 150 nucleotides GFF4310 and GFF4311 are separated by 147 nucleotides GFF4311 and GFF4312 are separated by 11 nucleotides
GFF4309 - Ferrous-iron efflux pump FieF, at 89,383 to 90,273
GFF4309
GFF4310 - hypothetical protein, at 90,424 to 91,188
GFF4310
GFF4311 - hypothetical protein, at 91,336 to 91,974
GFF4311
GFF4312 - Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, at 91,986 to 92,831
GFF4312
Position (kb) 90
91
92 Strain fitness (log2 ratio) -1
0
1 at 89.979 kb on - strand, within GFF4309 at 89.981 kb on + strand, within GFF4309 at 89.981 kb on + strand, within GFF4309 at 89.981 kb on + strand, within GFF4309 at 89.982 kb on - strand, within GFF4309 at 89.982 kb on - strand, within GFF4309 at 89.982 kb on - strand, within GFF4309 at 89.982 kb on - strand, within GFF4309 at 90.048 kb on - strand, within GFF4309 at 90.342 kb on - strand at 90.342 kb on - strand at 90.402 kb on + strand at 90.402 kb on + strand at 90.403 kb on - strand at 90.414 kb on - strand at 90.426 kb on - strand at 90.918 kb on - strand, within GFF4310 at 90.959 kb on + strand, within GFF4310 at 90.960 kb on - strand, within GFF4310 at 90.960 kb on - strand, within GFF4310 at 91.283 kb on + strand at 91.284 kb on - strand at 91.284 kb on - strand at 91.386 kb on - strand at 91.386 kb on - strand at 91.415 kb on + strand, within GFF4311 at 91.415 kb on + strand, within GFF4311 at 91.415 kb on + strand, within GFF4311 at 91.416 kb on - strand, within GFF4311 at 91.482 kb on + strand, within GFF4311 at 91.514 kb on + strand, within GFF4311 at 91.515 kb on - strand, within GFF4311 at 91.515 kb on - strand, within GFF4311 at 91.596 kb on - strand, within GFF4311
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 89,979 - GFF4309 0.67 +0.3 89,981 + GFF4309 0.67 +0.9 89,981 + GFF4309 0.67 +0.7 89,981 + GFF4309 0.67 +0.3 89,982 - GFF4309 0.67 +0.5 89,982 - GFF4309 0.67 -0.4 89,982 - GFF4309 0.67 +1.4 89,982 - GFF4309 0.67 +0.3 90,048 - GFF4309 0.75 +0.5 90,342 - +0.0 90,342 - +0.9 90,402 + +1.6 90,402 + -0.5 90,403 - -0.3 90,414 - +0.1 90,426 - -0.9 90,918 - GFF4310 0.65 -0.2 90,959 + GFF4310 0.70 -0.7 90,960 - GFF4310 0.70 -0.2 90,960 - GFF4310 0.70 -1.1 91,283 + +0.2 91,284 - +0.6 91,284 - -0.3 91,386 - +0.2 91,386 - -0.2 91,415 + GFF4311 0.12 -0.8 91,415 + GFF4311 0.12 -0.1 91,415 + GFF4311 0.12 +0.8 91,416 - GFF4311 0.13 +0.3 91,482 + GFF4311 0.23 +0.4 91,514 + GFF4311 0.28 -0.4 91,515 - GFF4311 0.28 +0.7 91,515 - GFF4311 0.28 -0.6 91,596 - GFF4311 0.41 +0.4
Or see this region's nucleotide sequence