Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF429 and GFF430 are separated by 222 nucleotides GFF430 and GFF431 are separated by 3 nucleotides
GFF429 - Sialic acid-binding periplasmic protein SiaP, at 452,135 to 453,124
GFF429
GFF430 - hypothetical protein, at 453,347 to 453,928
GFF430
GFF431 - Sialic acid TRAP transporter large permease protein SiaM, at 453,932 to 455,338
GFF431
Position (kb) 453
454 Strain fitness (log2 ratio) -2
-1
0
1 at 452.432 kb on + strand, within GFF429 at 452.432 kb on + strand, within GFF429 at 452.453 kb on + strand, within GFF429 at 452.453 kb on + strand, within GFF429 at 452.454 kb on - strand, within GFF429 at 452.454 kb on - strand, within GFF429 at 452.454 kb on - strand, within GFF429 at 452.456 kb on + strand, within GFF429 at 452.462 kb on + strand, within GFF429 at 452.573 kb on + strand, within GFF429 at 452.574 kb on - strand, within GFF429 at 452.576 kb on + strand, within GFF429 at 452.666 kb on + strand, within GFF429 at 452.666 kb on + strand, within GFF429 at 452.667 kb on - strand, within GFF429 at 452.667 kb on - strand, within GFF429 at 452.667 kb on - strand, within GFF429 at 452.667 kb on - strand, within GFF429 at 452.726 kb on + strand, within GFF429 at 452.727 kb on - strand, within GFF429 at 452.727 kb on - strand, within GFF429 at 452.727 kb on - strand, within GFF429 at 452.727 kb on - strand, within GFF429 at 453.168 kb on + strand at 453.168 kb on + strand at 453.169 kb on - strand at 453.169 kb on - strand at 453.169 kb on - strand at 453.394 kb on + strand at 453.394 kb on + strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.395 kb on - strand at 453.554 kb on + strand, within GFF430 at 453.554 kb on + strand, within GFF430 at 453.554 kb on + strand, within GFF430 at 453.554 kb on + strand, within GFF430 at 453.555 kb on - strand, within GFF430 at 453.555 kb on - strand, within GFF430 at 453.555 kb on - strand, within GFF430 at 453.555 kb on - strand, within GFF430 at 453.621 kb on + strand, within GFF430 at 453.622 kb on - strand, within GFF430 at 453.622 kb on - strand, within GFF430 at 453.622 kb on - strand, within GFF430 at 453.707 kb on + strand, within GFF430 at 453.794 kb on + strand, within GFF430 at 453.795 kb on - strand, within GFF430 at 453.908 kb on + strand at 453.908 kb on + strand at 454.017 kb on - strand at 454.160 kb on + strand, within GFF431 at 454.316 kb on + strand, within GFF431 at 454.317 kb on - strand, within GFF431 at 454.424 kb on + strand, within GFF431 at 454.682 kb on + strand, within GFF431 at 454.682 kb on + strand, within GFF431
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 452,432 + GFF429 0.30 -2.0 452,432 + GFF429 0.30 +0.6 452,453 + GFF429 0.32 -0.2 452,453 + GFF429 0.32 -0.2 452,454 - GFF429 0.32 +0.1 452,454 - GFF429 0.32 -0.7 452,454 - GFF429 0.32 +0.4 452,456 + GFF429 0.32 -0.0 452,462 + GFF429 0.33 -0.0 452,573 + GFF429 0.44 -0.3 452,574 - GFF429 0.44 +1.3 452,576 + GFF429 0.45 -1.0 452,666 + GFF429 0.54 +0.9 452,666 + GFF429 0.54 +0.5 452,667 - GFF429 0.54 +0.4 452,667 - GFF429 0.54 +0.2 452,667 - GFF429 0.54 +0.8 452,667 - GFF429 0.54 -0.3 452,726 + GFF429 0.60 -0.8 452,727 - GFF429 0.60 -0.6 452,727 - GFF429 0.60 -0.3 452,727 - GFF429 0.60 -0.1 452,727 - GFF429 0.60 +0.4 453,168 + -0.1 453,168 + -0.6 453,169 - +0.1 453,169 - +0.6 453,169 - +0.3 453,394 + -1.9 453,394 + +0.3 453,395 - -0.5 453,395 - +0.3 453,395 - +0.1 453,554 + GFF430 0.36 -1.9 453,554 + GFF430 0.36 +0.3 453,554 + GFF430 0.36 +0.4 453,554 + GFF430 0.36 +0.3 453,555 - GFF430 0.36 -0.3 453,555 - GFF430 0.36 -0.1 453,555 - GFF430 0.36 +0.3 453,555 - GFF430 0.36 -0.1 453,621 + GFF430 0.47 -1.5 453,622 - GFF430 0.47 -0.4 453,622 - GFF430 0.47 +1.3 453,622 - GFF430 0.47 -1.0 453,707 + GFF430 0.62 +0.8 453,794 + GFF430 0.77 +1.3 453,795 - GFF430 0.77 +0.7 453,908 + -0.5 453,908 + +0.4 454,017 - +0.2 454,160 + GFF431 0.16 -0.2 454,316 + GFF431 0.27 +0.0 454,317 - GFF431 0.27 +0.0 454,424 + GFF431 0.35 +0.3 454,682 + GFF431 0.53 -0.6 454,682 + GFF431 0.53 +0.3
Or see this region's nucleotide sequence