Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4274 and GFF4275 are separated by 118 nucleotides GFF4275 and GFF4276 are separated by 203 nucleotides GFF4276 and GFF4277 are separated by 139 nucleotides
GFF4274 - Vitamin B12 transport ATP-binding protein BacA, at 42,965 to 44,743
GFF4274
GFF4275 - H(+)/Cl(-) exchange transporter ClcA, at 44,862 to 46,226
GFF4275
GFF4276 - Peptide deformylase, at 46,430 to 46,939
GFF4276
GFF4277 - hypothetical protein, at 47,079 to 48,191
GFF4277
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -1
0
1 at 43.862 kb on + strand, within GFF4274 at 43.883 kb on + strand, within GFF4274 at 43.976 kb on + strand, within GFF4274 at 43.976 kb on + strand, within GFF4274 at 43.977 kb on - strand, within GFF4274 at 44.017 kb on + strand, within GFF4274 at 44.318 kb on + strand, within GFF4274 at 44.318 kb on + strand, within GFF4274 at 44.318 kb on + strand, within GFF4274 at 44.319 kb on - strand, within GFF4274 at 44.319 kb on - strand, within GFF4274 at 44.319 kb on - strand, within GFF4274 at 44.319 kb on - strand, within GFF4274 at 44.585 kb on + strand at 44.585 kb on + strand at 44.586 kb on - strand at 44.807 kb on - strand at 44.904 kb on + strand at 44.908 kb on - strand at 44.908 kb on - strand at 45.435 kb on + strand, within GFF4275 at 45.435 kb on + strand, within GFF4275 at 45.436 kb on - strand, within GFF4275 at 45.436 kb on - strand, within GFF4275 at 45.436 kb on - strand, within GFF4275 at 45.437 kb on + strand, within GFF4275 at 45.438 kb on - strand, within GFF4275 at 45.438 kb on - strand, within GFF4275 at 45.438 kb on - strand, within GFF4275 at 45.510 kb on - strand, within GFF4275 at 45.657 kb on + strand, within GFF4275 at 45.658 kb on - strand, within GFF4275 at 45.658 kb on - strand, within GFF4275 at 45.660 kb on - strand, within GFF4275 at 45.660 kb on - strand, within GFF4275 at 45.825 kb on + strand, within GFF4275 at 45.826 kb on - strand, within GFF4275 at 45.848 kb on + strand, within GFF4275 at 46.038 kb on + strand, within GFF4275 at 46.116 kb on + strand at 46.117 kb on - strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.225 kb on - strand at 46.643 kb on + strand, within GFF4276 at 46.643 kb on + strand, within GFF4276 at 46.643 kb on + strand, within GFF4276 at 46.643 kb on + strand, within GFF4276 at 46.644 kb on - strand, within GFF4276 at 46.644 kb on - strand, within GFF4276 at 46.644 kb on - strand, within GFF4276 at 46.648 kb on - strand, within GFF4276 at 47.020 kb on + strand at 47.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 43,862 + GFF4274 0.50 +0.7 43,883 + GFF4274 0.52 +0.5 43,976 + GFF4274 0.57 -0.3 43,976 + GFF4274 0.57 +0.0 43,977 - GFF4274 0.57 +1.0 44,017 + GFF4274 0.59 +0.8 44,318 + GFF4274 0.76 -0.2 44,318 + GFF4274 0.76 +0.8 44,318 + GFF4274 0.76 +0.2 44,319 - GFF4274 0.76 +1.0 44,319 - GFF4274 0.76 -0.1 44,319 - GFF4274 0.76 +0.6 44,319 - GFF4274 0.76 +0.2 44,585 + -0.5 44,585 + +1.2 44,586 - +0.1 44,807 - +0.6 44,904 + -0.2 44,908 - +0.3 44,908 - -0.7 45,435 + GFF4275 0.42 -1.0 45,435 + GFF4275 0.42 +0.4 45,436 - GFF4275 0.42 +0.8 45,436 - GFF4275 0.42 +0.2 45,436 - GFF4275 0.42 -0.1 45,437 + GFF4275 0.42 -0.7 45,438 - GFF4275 0.42 -0.2 45,438 - GFF4275 0.42 +0.4 45,438 - GFF4275 0.42 -1.2 45,510 - GFF4275 0.47 +0.4 45,657 + GFF4275 0.58 +0.2 45,658 - GFF4275 0.58 -0.1 45,658 - GFF4275 0.58 +0.8 45,660 - GFF4275 0.58 +0.1 45,660 - GFF4275 0.58 -0.4 45,825 + GFF4275 0.71 -0.3 45,826 - GFF4275 0.71 -0.2 45,848 + GFF4275 0.72 -1.2 46,038 + GFF4275 0.86 -0.0 46,116 + -1.1 46,117 - +0.9 46,224 + +0.6 46,224 + +0.4 46,225 - +0.4 46,643 + GFF4276 0.42 +0.6 46,643 + GFF4276 0.42 +0.2 46,643 + GFF4276 0.42 +0.5 46,643 + GFF4276 0.42 +0.8 46,644 - GFF4276 0.42 -0.4 46,644 - GFF4276 0.42 -0.4 46,644 - GFF4276 0.42 -0.5 46,648 - GFF4276 0.43 -0.7 47,020 + +0.2 47,021 - -0.5
Or see this region's nucleotide sequence