Strain Fitness in Xanthobacter sp. DMC5 around GFF4272

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4271 and GFF4272 are separated by 238 nucleotidesGFF4272 and GFF4273 are separated by 6 nucleotidesGFF4273 and GFF4274 are separated by 200 nucleotides GFF4271 - Acetyl-coenzyme A synthetase, at 38,756 to 40,672 GFF4271 GFF4272 - Long-chain-fatty-acid--CoA ligase, at 40,911 to 42,536 GFF4272 GFF4273 - hypothetical protein, at 42,543 to 42,764 GFF4273 GFF4274 - Vitamin B12 transport ATP-binding protein BacA, at 42,965 to 44,743 GFF4274 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 39.928 kb on + strand, within GFF4271at 39.928 kb on + strand, within GFF4271at 39.929 kb on - strand, within GFF4271at 39.930 kb on + strand, within GFF4271at 39.930 kb on + strand, within GFF4271at 39.931 kb on - strand, within GFF4271at 39.931 kb on - strand, within GFF4271at 39.940 kb on - strand, within GFF4271at 40.040 kb on + strand, within GFF4271at 40.131 kb on + strand, within GFF4271at 40.132 kb on - strand, within GFF4271at 40.311 kb on + strand, within GFF4271at 40.312 kb on - strand, within GFF4271at 40.312 kb on - strand, within GFF4271at 40.395 kb on + strand, within GFF4271at 40.395 kb on + strand, within GFF4271at 40.395 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.434 kb on + strand, within GFF4271at 40.435 kb on - strand, within GFF4271at 40.435 kb on - strand, within GFF4271at 40.636 kb on - strandat 40.750 kb on - strandat 40.750 kb on - strandat 40.794 kb on + strandat 40.794 kb on + strandat 40.795 kb on - strandat 40.843 kb on - strandat 40.923 kb on + strandat 40.923 kb on + strandat 40.923 kb on + strandat 40.924 kb on - strandat 41.049 kb on + strandat 41.050 kb on - strandat 41.061 kb on + strandat 41.062 kb on - strandat 41.169 kb on + strand, within GFF4272at 41.170 kb on - strand, within GFF4272at 41.397 kb on + strand, within GFF4272at 41.397 kb on + strand, within GFF4272at 41.398 kb on - strand, within GFF4272at 41.479 kb on - strand, within GFF4272at 41.479 kb on - strand, within GFF4272at 41.480 kb on + strand, within GFF4272at 41.481 kb on - strand, within GFF4272at 41.481 kb on - strand, within GFF4272at 41.481 kb on - strand, within GFF4272at 41.517 kb on + strand, within GFF4272at 41.517 kb on + strand, within GFF4272at 41.785 kb on - strand, within GFF4272at 41.892 kb on + strand, within GFF4272at 41.892 kb on + strand, within GFF4272at 41.892 kb on + strand, within GFF4272at 41.893 kb on - strand, within GFF4272at 41.893 kb on - strand, within GFF4272at 41.893 kb on - strand, within GFF4272at 41.910 kb on + strand, within GFF4272at 41.911 kb on - strand, within GFF4272at 42.003 kb on + strand, within GFF4272at 42.003 kb on + strand, within GFF4272at 42.004 kb on - strand, within GFF4272at 42.004 kb on - strand, within GFF4272at 42.103 kb on + strand, within GFF4272at 42.103 kb on + strand, within GFF4272at 42.103 kb on + strand, within GFF4272at 42.104 kb on - strand, within GFF4272at 42.118 kb on - strand, within GFF4272at 42.118 kb on - strand, within GFF4272at 42.288 kb on + strand, within GFF4272at 42.288 kb on + strand, within GFF4272at 42.288 kb on + strand, within GFF4272at 42.288 kb on + strand, within GFF4272at 42.288 kb on + strand, within GFF4272at 42.438 kb on + strandat 42.439 kb on - strandat 42.858 kb on + strandat 43.014 kb on + strandat 43.014 kb on + strandat 43.021 kb on - strandat 43.052 kb on + strandat 43.167 kb on - strand, within GFF4274at 43.176 kb on + strand, within GFF4274at 43.177 kb on - strand, within GFF4274at 43.177 kb on - strand, within GFF4274at 43.177 kb on - strand, within GFF4274at 43.260 kb on - strand, within GFF4274at 43.268 kb on + strand, within GFF4274at 43.269 kb on - strand, within GFF4274at 43.352 kb on + strand, within GFF4274

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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39,928 + GFF4271 0.61 -0.7
39,928 + GFF4271 0.61 +0.0
39,929 - GFF4271 0.61 +0.4
39,930 + GFF4271 0.61 -1.4
39,930 + GFF4271 0.61 -0.3
39,931 - GFF4271 0.61 -0.4
39,931 - GFF4271 0.61 -0.2
39,940 - GFF4271 0.62 +0.5
40,040 + GFF4271 0.67 -0.8
40,131 + GFF4271 0.72 -2.1
40,132 - GFF4271 0.72 -1.0
40,311 + GFF4271 0.81 -1.2
40,312 - GFF4271 0.81 +0.1
40,312 - GFF4271 0.81 -0.3
40,395 + GFF4271 0.85 +0.0
40,395 + GFF4271 0.85 +0.3
40,395 + GFF4271 0.85 +1.4
40,434 + GFF4271 0.88 +0.1
40,434 + GFF4271 0.88 +0.3
40,434 + GFF4271 0.88 +0.3
40,434 + GFF4271 0.88 +0.5
40,434 + GFF4271 0.88 +0.2
40,434 + GFF4271 0.88 +0.2
40,434 + GFF4271 0.88 +1.1
40,435 - GFF4271 0.88 +0.9
40,435 - GFF4271 0.88 -0.8
40,636 - +0.1
40,750 - +0.5
40,750 - +0.6
40,794 + -0.6
40,794 + +0.4
40,795 - -0.6
40,843 - +0.7
40,923 + -0.1
40,923 + -0.7
40,923 + -0.4
40,924 - -0.0
41,049 + +0.7
41,050 - -0.4
41,061 + -0.7
41,062 - +0.1
41,169 + GFF4272 0.16 +0.3
41,170 - GFF4272 0.16 -0.6
41,397 + GFF4272 0.30 +0.2
41,397 + GFF4272 0.30 +0.1
41,398 - GFF4272 0.30 -0.6
41,479 - GFF4272 0.35 -0.2
41,479 - GFF4272 0.35 +0.4
41,480 + GFF4272 0.35 -0.9
41,481 - GFF4272 0.35 +0.9
41,481 - GFF4272 0.35 +1.1
41,481 - GFF4272 0.35 -0.9
41,517 + GFF4272 0.37 +0.2
41,517 + GFF4272 0.37 -0.4
41,785 - GFF4272 0.54 +0.4
41,892 + GFF4272 0.60 -0.1
41,892 + GFF4272 0.60 -0.2
41,892 + GFF4272 0.60 -0.2
41,893 - GFF4272 0.60 +0.6
41,893 - GFF4272 0.60 +0.2
41,893 - GFF4272 0.60 -0.1
41,910 + GFF4272 0.61 -1.1
41,911 - GFF4272 0.62 +0.3
42,003 + GFF4272 0.67 +0.0
42,003 + GFF4272 0.67 +0.2
42,004 - GFF4272 0.67 -0.3
42,004 - GFF4272 0.67 +0.2
42,103 + GFF4272 0.73 -0.4
42,103 + GFF4272 0.73 +0.3
42,103 + GFF4272 0.73 -0.6
42,104 - GFF4272 0.73 -0.0
42,118 - GFF4272 0.74 +0.1
42,118 - GFF4272 0.74 +0.2
42,288 + GFF4272 0.85 -0.3
42,288 + GFF4272 0.85 -0.2
42,288 + GFF4272 0.85 -0.0
42,288 + GFF4272 0.85 -0.2
42,288 + GFF4272 0.85 +0.5
42,438 + +0.0
42,439 - -0.2
42,858 + +0.1
43,014 + +0.7
43,014 + -0.9
43,021 - -0.1
43,052 + +1.0
43,167 - GFF4274 0.11 +0.2
43,176 + GFF4274 0.12 -1.4
43,177 - GFF4274 0.12 +0.3
43,177 - GFF4274 0.12 +1.6
43,177 - GFF4274 0.12 -0.3
43,260 - GFF4274 0.17 +0.4
43,268 + GFF4274 0.17 -0.3
43,269 - GFF4274 0.17 +0.4
43,352 + GFF4274 0.22 -0.4

Or see this region's nucleotide sequence