Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4258 and GFF4259 are separated by 60 nucleotides GFF4259 and GFF4260 are separated by 9 nucleotides GFF4260 and GFF4261 are separated by 254 nucleotides GFF4261 and GFF4262 are separated by 313 nucleotides
GFF4258 - Pyridoxine/pyridoxamine 5'-phosphate oxidase, at 27,998 to 28,639
GFF4258
GFF4259 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 28,700 to 29,449
GFF4259
GFF4260 - Magnesium transport protein CorA, at 29,459 to 30,433
GFF4260
GFF4261 - hypothetical protein, at 30,688 to 30,891
GFF4261
GFF4262 - hypothetical protein, at 31,205 to 31,807
GFF4262
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1
2 at 28.476 kb on - strand, within GFF4258 at 28.631 kb on + strand at 28.632 kb on - strand at 28.675 kb on + strand at 28.778 kb on - strand, within GFF4259 at 29.025 kb on - strand, within GFF4259 at 29.181 kb on - strand, within GFF4259 at 29.181 kb on - strand, within GFF4259 at 29.312 kb on + strand, within GFF4259 at 29.375 kb on + strand at 29.375 kb on + strand at 29.375 kb on + strand at 29.376 kb on - strand at 29.402 kb on + strand at 29.402 kb on + strand at 29.403 kb on - strand at 29.403 kb on - strand at 29.460 kb on + strand at 29.461 kb on - strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.541 kb on + strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.542 kb on - strand at 29.724 kb on + strand, within GFF4260 at 29.724 kb on + strand, within GFF4260 at 29.764 kb on + strand, within GFF4260 at 29.764 kb on + strand, within GFF4260 at 29.764 kb on + strand, within GFF4260 at 29.764 kb on + strand, within GFF4260 at 29.765 kb on - strand, within GFF4260 at 29.859 kb on + strand, within GFF4260 at 30.041 kb on - strand, within GFF4260 at 30.217 kb on - strand, within GFF4260 at 30.217 kb on - strand, within GFF4260 at 30.236 kb on - strand, within GFF4260 at 30.236 kb on - strand, within GFF4260 at 30.236 kb on - strand, within GFF4260 at 30.236 kb on - strand, within GFF4260 at 30.238 kb on - strand, within GFF4260 at 30.238 kb on - strand, within GFF4260 at 30.421 kb on - strand at 30.421 kb on - strand at 30.462 kb on + strand at 30.539 kb on - strand at 30.729 kb on + strand, within GFF4261 at 30.730 kb on - strand, within GFF4261 at 30.730 kb on - strand, within GFF4261 at 30.730 kb on - strand, within GFF4261 at 30.730 kb on - strand, within GFF4261 at 30.838 kb on - strand, within GFF4261 at 30.885 kb on + strand at 31.014 kb on + strand at 31.015 kb on - strand at 31.044 kb on + strand at 31.045 kb on - strand at 31.144 kb on + strand at 31.145 kb on - strand at 31.148 kb on + strand at 31.192 kb on + strand at 31.193 kb on - strand at 31.373 kb on - strand, within GFF4262 at 31.383 kb on - strand, within GFF4262
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 28,476 - GFF4258 0.74 -1.5 28,631 + -1.0 28,632 - -1.7 28,675 + -0.8 28,778 - GFF4259 0.10 -0.4 29,025 - GFF4259 0.43 -0.1 29,181 - GFF4259 0.64 -0.5 29,181 - GFF4259 0.64 -0.6 29,312 + GFF4259 0.82 +1.6 29,375 + -0.2 29,375 + -0.0 29,375 + +0.3 29,376 - +1.0 29,402 + -0.4 29,402 + +0.0 29,403 - -0.1 29,403 - -0.4 29,460 + +0.5 29,461 - +0.4 29,541 + -0.0 29,541 + +0.0 29,541 + -0.4 29,541 + -0.7 29,541 + +0.5 29,541 + +0.2 29,541 + +0.1 29,542 - +0.1 29,542 - -0.5 29,542 - -0.0 29,542 - +0.5 29,542 - -0.8 29,542 - +0.5 29,542 - +0.4 29,542 - -0.4 29,542 - +1.0 29,724 + GFF4260 0.27 -0.3 29,724 + GFF4260 0.27 -0.2 29,764 + GFF4260 0.31 -0.4 29,764 + GFF4260 0.31 +1.3 29,764 + GFF4260 0.31 -0.4 29,764 + GFF4260 0.31 +0.2 29,765 - GFF4260 0.31 +0.3 29,859 + GFF4260 0.41 -0.1 30,041 - GFF4260 0.60 -0.1 30,217 - GFF4260 0.78 -0.0 30,217 - GFF4260 0.78 +0.5 30,236 - GFF4260 0.80 +0.2 30,236 - GFF4260 0.80 -0.1 30,236 - GFF4260 0.80 +0.8 30,236 - GFF4260 0.80 +0.2 30,238 - GFF4260 0.80 -0.0 30,238 - GFF4260 0.80 +1.2 30,421 - +0.2 30,421 - -1.0 30,462 + -0.4 30,539 - -0.7 30,729 + GFF4261 0.20 -0.1 30,730 - GFF4261 0.21 +0.1 30,730 - GFF4261 0.21 +0.8 30,730 - GFF4261 0.21 +1.3 30,730 - GFF4261 0.21 +0.5 30,838 - GFF4261 0.74 +1.6 30,885 + +1.6 31,014 + -0.2 31,015 - +1.2 31,044 + +0.2 31,045 - +0.8 31,144 + +0.7 31,145 - +1.4 31,148 + +2.2 31,192 + -0.4 31,193 - +0.2 31,373 - GFF4262 0.28 +0.6 31,383 - GFF4262 0.30 +0.6
Or see this region's nucleotide sequence