Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4245 and GFF4246 are separated by 4 nucleotides GFF4246 and GFF4247 are separated by 81 nucleotides GFF4247 and GFF4248 overlap by 4 nucleotides
GFF4245 - putative GTPase, at 16,120 to 17,106
GFF4245
GFF4246 - Pyrrolidone-carboxylate peptidase, at 17,111 to 17,740
GFF4246
GFF4247 - hypothetical protein, at 17,822 to 18,748
GFF4247
GFF4248 - hypothetical protein, at 18,745 to 19,560
GFF4248
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.835 kb on - strand, within GFF4245 at 17.468 kb on - strand, within GFF4246 at 17.544 kb on - strand, within GFF4246 at 17.561 kb on + strand, within GFF4246 at 17.738 kb on + strand at 17.752 kb on - strand at 17.786 kb on + strand at 17.787 kb on - strand at 17.806 kb on + strand at 17.807 kb on - strand at 17.807 kb on - strand at 17.807 kb on - strand at 17.999 kb on + strand, within GFF4247 at 18.000 kb on - strand, within GFF4247 at 18.000 kb on - strand, within GFF4247 at 18.000 kb on - strand, within GFF4247 at 18.035 kb on + strand, within GFF4247 at 18.035 kb on + strand, within GFF4247 at 18.051 kb on + strand, within GFF4247 at 18.052 kb on - strand, within GFF4247 at 18.052 kb on - strand, within GFF4247 at 18.105 kb on + strand, within GFF4247 at 18.105 kb on + strand, within GFF4247 at 18.105 kb on + strand, within GFF4247 at 18.105 kb on + strand, within GFF4247 at 18.106 kb on - strand, within GFF4247 at 18.173 kb on + strand, within GFF4247 at 18.173 kb on + strand, within GFF4247 at 18.174 kb on - strand, within GFF4247 at 18.174 kb on - strand, within GFF4247 at 18.335 kb on + strand, within GFF4247 at 18.335 kb on + strand, within GFF4247 at 18.336 kb on - strand, within GFF4247 at 18.336 kb on - strand, within GFF4247 at 18.336 kb on - strand, within GFF4247 at 18.336 kb on - strand, within GFF4247 at 18.369 kb on - strand, within GFF4247 at 18.564 kb on + strand, within GFF4247 at 18.564 kb on + strand, within GFF4247 at 18.564 kb on + strand, within GFF4247 at 18.565 kb on - strand, within GFF4247 at 19.487 kb on + strand at 19.487 kb on + strand at 19.523 kb on + strand at 19.524 kb on - strand at 19.541 kb on + strand at 19.542 kb on - strand at 19.542 kb on - strand at 19.630 kb on + strand at 19.631 kb on - strand at 19.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 16,835 - GFF4245 0.72 +0.3 17,468 - GFF4246 0.57 -0.1 17,544 - GFF4246 0.69 +0.1 17,561 + GFF4246 0.71 -1.0 17,738 + +0.4 17,752 - +0.1 17,786 + +1.3 17,787 - -0.9 17,806 + -1.0 17,807 - -0.1 17,807 - -2.0 17,807 - -0.9 17,999 + GFF4247 0.19 +0.6 18,000 - GFF4247 0.19 +0.4 18,000 - GFF4247 0.19 +0.5 18,000 - GFF4247 0.19 +0.5 18,035 + GFF4247 0.23 +0.3 18,035 + GFF4247 0.23 +0.1 18,051 + GFF4247 0.25 -0.9 18,052 - GFF4247 0.25 -0.1 18,052 - GFF4247 0.25 -0.7 18,105 + GFF4247 0.31 -0.2 18,105 + GFF4247 0.31 +0.1 18,105 + GFF4247 0.31 +0.6 18,105 + GFF4247 0.31 -0.7 18,106 - GFF4247 0.31 +0.7 18,173 + GFF4247 0.38 -0.6 18,173 + GFF4247 0.38 -1.0 18,174 - GFF4247 0.38 -1.5 18,174 - GFF4247 0.38 -0.4 18,335 + GFF4247 0.55 +0.8 18,335 + GFF4247 0.55 +0.4 18,336 - GFF4247 0.55 -0.2 18,336 - GFF4247 0.55 -0.3 18,336 - GFF4247 0.55 -2.1 18,336 - GFF4247 0.55 -2.1 18,369 - GFF4247 0.59 +0.8 18,564 + GFF4247 0.80 -1.5 18,564 + GFF4247 0.80 +0.3 18,564 + GFF4247 0.80 -0.5 18,565 - GFF4247 0.80 +0.1 19,487 + +0.2 19,487 + +0.8 19,523 + -0.7 19,524 - -0.5 19,541 + +0.2 19,542 - +0.0 19,542 - +1.2 19,630 + +0.8 19,631 - +0.1 19,631 - +0.0
Or see this region's nucleotide sequence