Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4242 and GFF4243 overlap by 4 nucleotides GFF4243 and GFF4244 are separated by 64 nucleotides GFF4244 and GFF4245 are separated by 93 nucleotides GFF4245 and GFF4246 are separated by 4 nucleotides GFF4246 and GFF4247 are separated by 81 nucleotides
GFF4242 - Dihydropteroate synthase, at 14,497 to 15,261
GFF4242
GFF4243 - Bifunctional folate synthesis protein, at 15,258 to 15,755
GFF4243
GFF4244 - hypothetical protein, at 15,820 to 16,026
GFF4244
GFF4245 - putative GTPase, at 16,120 to 17,106
GFF4245
GFF4246 - Pyrrolidone-carboxylate peptidase, at 17,111 to 17,740
GFF4246
GFF4247 - hypothetical protein, at 17,822 to 18,748
GFF4247
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 15.270 kb on + strand at 15.849 kb on + strand, within GFF4244 at 15.955 kb on - strand, within GFF4244 at 16.041 kb on + strand at 16.041 kb on + strand at 16.043 kb on + strand at 16.043 kb on + strand at 16.044 kb on - strand at 16.285 kb on + strand, within GFF4245 at 16.285 kb on + strand, within GFF4245 at 16.347 kb on + strand, within GFF4245 at 16.347 kb on + strand, within GFF4245 at 16.348 kb on - strand, within GFF4245 at 16.351 kb on + strand, within GFF4245 at 16.351 kb on + strand, within GFF4245 at 16.352 kb on - strand, within GFF4245 at 16.443 kb on + strand, within GFF4245 at 16.444 kb on - strand, within GFF4245 at 16.835 kb on - strand, within GFF4245 at 17.468 kb on - strand, within GFF4246 at 17.544 kb on - strand, within GFF4246 at 17.561 kb on + strand, within GFF4246 at 17.738 kb on + strand at 17.752 kb on - strand at 17.786 kb on + strand at 17.787 kb on - strand at 17.806 kb on + strand at 17.807 kb on - strand at 17.807 kb on - strand at 17.807 kb on - strand at 17.999 kb on + strand, within GFF4247 at 18.000 kb on - strand, within GFF4247 at 18.000 kb on - strand, within GFF4247 at 18.000 kb on - strand, within GFF4247 at 18.035 kb on + strand, within GFF4247 at 18.035 kb on + strand, within GFF4247 at 18.051 kb on + strand, within GFF4247 at 18.052 kb on - strand, within GFF4247 at 18.052 kb on - strand, within GFF4247 at 18.105 kb on + strand, within GFF4247 at 18.105 kb on + strand, within GFF4247 at 18.105 kb on + strand, within GFF4247 at 18.105 kb on + strand, within GFF4247 at 18.106 kb on - strand, within GFF4247
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 15,270 + -1.0 15,849 + GFF4244 0.14 +0.8 15,955 - GFF4244 0.65 +0.0 16,041 + +0.0 16,041 + -1.4 16,043 + +0.0 16,043 + -0.2 16,044 - +0.0 16,285 + GFF4245 0.17 -0.3 16,285 + GFF4245 0.17 -1.3 16,347 + GFF4245 0.23 +0.5 16,347 + GFF4245 0.23 -0.1 16,348 - GFF4245 0.23 -0.0 16,351 + GFF4245 0.23 +0.8 16,351 + GFF4245 0.23 +1.2 16,352 - GFF4245 0.24 -0.1 16,443 + GFF4245 0.33 -1.1 16,444 - GFF4245 0.33 -1.1 16,835 - GFF4245 0.72 +0.3 17,468 - GFF4246 0.57 -0.1 17,544 - GFF4246 0.69 +0.1 17,561 + GFF4246 0.71 -1.0 17,738 + +0.4 17,752 - +0.1 17,786 + +1.3 17,787 - -0.9 17,806 + -1.0 17,807 - -0.1 17,807 - -2.0 17,807 - -0.9 17,999 + GFF4247 0.19 +0.6 18,000 - GFF4247 0.19 +0.4 18,000 - GFF4247 0.19 +0.5 18,000 - GFF4247 0.19 +0.5 18,035 + GFF4247 0.23 +0.3 18,035 + GFF4247 0.23 +0.1 18,051 + GFF4247 0.25 -0.9 18,052 - GFF4247 0.25 -0.1 18,052 - GFF4247 0.25 -0.7 18,105 + GFF4247 0.31 -0.2 18,105 + GFF4247 0.31 +0.1 18,105 + GFF4247 0.31 +0.6 18,105 + GFF4247 0.31 -0.7 18,106 - GFF4247 0.31 +0.7
Or see this region's nucleotide sequence