Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF422 and GFF423 are separated by 158 nucleotides GFF423 and GFF424 are separated by 143 nucleotides
GFF422 - hypothetical protein, at 438,356 to 438,895
GFF422
GFF423 - hypothetical protein, at 439,054 to 439,482
GFF423
GFF424 - Peptide chain release factor RF2, at 439,626 to 440,756
GFF424
Position (kb) 439
440 Strain fitness (log2 ratio) -1
0
1
2 at 438.136 kb on - strand at 438.182 kb on + strand at 438.182 kb on + strand at 438.183 kb on - strand at 438.183 kb on - strand at 438.247 kb on + strand at 438.247 kb on + strand at 438.251 kb on - strand at 438.391 kb on - strand at 438.406 kb on - strand at 438.406 kb on - strand at 438.423 kb on + strand, within GFF422 at 438.424 kb on - strand, within GFF422 at 438.499 kb on - strand, within GFF422 at 438.499 kb on - strand, within GFF422 at 438.611 kb on - strand, within GFF422 at 438.612 kb on + strand, within GFF422 at 438.613 kb on - strand, within GFF422 at 438.748 kb on - strand, within GFF422 at 438.748 kb on - strand, within GFF422 at 438.775 kb on - strand, within GFF422 at 438.775 kb on - strand, within GFF422 at 438.877 kb on + strand at 438.878 kb on - strand at 438.878 kb on - strand at 439.065 kb on + strand at 439.295 kb on + strand, within GFF423 at 439.296 kb on - strand, within GFF423 at 439.296 kb on - strand, within GFF423 at 439.337 kb on + strand, within GFF423 at 439.338 kb on - strand, within GFF423 at 439.451 kb on + strand at 439.451 kb on + strand at 439.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 438,136 - +1.0 438,182 + -0.9 438,182 + +0.2 438,183 - -0.1 438,183 - +0.3 438,247 + -0.2 438,247 + -1.1 438,251 - -0.2 438,391 - -0.5 438,406 - -0.4 438,406 - -0.4 438,423 + GFF422 0.12 +0.2 438,424 - GFF422 0.13 -0.5 438,499 - GFF422 0.26 -0.1 438,499 - GFF422 0.26 +1.9 438,611 - GFF422 0.47 +1.1 438,612 + GFF422 0.47 +0.9 438,613 - GFF422 0.48 -0.1 438,748 - GFF422 0.73 +0.4 438,748 - GFF422 0.73 +0.9 438,775 - GFF422 0.78 +0.6 438,775 - GFF422 0.78 -0.4 438,877 + -0.9 438,878 - -0.4 438,878 - -0.5 439,065 + -0.3 439,295 + GFF423 0.56 -0.5 439,296 - GFF423 0.56 -1.0 439,296 - GFF423 0.56 -0.3 439,337 + GFF423 0.66 -0.8 439,338 - GFF423 0.66 +0.9 439,451 + +0.5 439,451 + -0.4 439,663 + +0.3
Or see this region's nucleotide sequence