Strain Fitness in Xanthobacter sp. DMC5 around GFF4219

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4218 and GFF4219 overlap by 4 nucleotidesGFF4219 and GFF4220 are separated by 38 nucleotidesGFF4220 and GFF4221 are separated by 5 nucleotides GFF4218 - putative enoyl-CoA hydratase echA12, at 247,638 to 248,471 GFF4218 GFF4219 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 248,468 to 249,205 GFF4219 GFF4220 - Ferredoxin-6, at 249,244 to 249,564 GFF4220 GFF4221 - Acetyl-CoA:oxalate CoA-transferase, at 249,570 to 250,706 GFF4221 Position (kb) 248 249 250Strain fitness (log2 ratio) -1 0 1at 247.714 kb on - strandat 247.800 kb on - strand, within GFF4218at 248.289 kb on + strand, within GFF4218at 248.289 kb on + strand, within GFF4218at 248.906 kb on + strand, within GFF4219at 248.906 kb on + strand, within GFF4219at 249.225 kb on - strandat 249.973 kb on - strand, within GFF4221at 249.973 kb on - strand, within GFF4221

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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247,714 - -0.9
247,800 - GFF4218 0.19 -0.9
248,289 + GFF4218 0.78 -0.1
248,289 + GFF4218 0.78 +1.2
248,906 + GFF4219 0.59 -1.3
248,906 + GFF4219 0.59 -0.2
249,225 - +0.0
249,973 - GFF4221 0.35 -0.2
249,973 - GFF4221 0.35 -0.0

Or see this region's nucleotide sequence