Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF418 and GFF419 are separated by 124 nucleotides GFF419 and GFF420 are separated by 91 nucleotides
GFF418 - Cysteine synthase, at 429,032 to 430,060
GFF418
GFF419 - Deoxyribodipyrimidine photo-lyase, at 430,185 to 431,660
GFF419
GFF420 - Inner membrane metabolite transport protein YhjE, at 431,752 to 433,098
GFF420
Position (kb) 430
431
432 Strain fitness (log2 ratio) -1
0
1
2 at 429.403 kb on + strand, within GFF418 at 429.404 kb on - strand, within GFF418 at 429.404 kb on - strand, within GFF418 at 429.404 kb on - strand, within GFF418 at 429.404 kb on - strand, within GFF418 at 429.405 kb on + strand, within GFF418 at 429.405 kb on + strand, within GFF418 at 429.406 kb on - strand, within GFF418 at 429.408 kb on + strand, within GFF418 at 429.409 kb on - strand, within GFF418 at 429.409 kb on - strand, within GFF418 at 429.414 kb on + strand, within GFF418 at 429.414 kb on + strand, within GFF418 at 429.414 kb on + strand, within GFF418 at 429.415 kb on - strand, within GFF418 at 429.580 kb on + strand, within GFF418 at 429.685 kb on - strand, within GFF418 at 430.102 kb on + strand at 430.103 kb on - strand at 430.103 kb on - strand at 430.292 kb on - strand at 430.292 kb on - strand at 430.292 kb on - strand at 430.292 kb on - strand at 430.393 kb on + strand, within GFF419 at 430.393 kb on + strand, within GFF419 at 430.393 kb on + strand, within GFF419 at 430.393 kb on + strand, within GFF419 at 430.393 kb on + strand, within GFF419 at 430.394 kb on - strand, within GFF419 at 430.405 kb on + strand, within GFF419 at 430.405 kb on + strand, within GFF419 at 430.405 kb on + strand, within GFF419 at 430.799 kb on - strand, within GFF419 at 430.816 kb on + strand, within GFF419 at 430.982 kb on - strand, within GFF419 at 431.554 kb on + strand at 431.555 kb on - strand at 431.831 kb on + strand at 431.831 kb on + strand at 431.831 kb on + strand at 431.831 kb on + strand at 431.832 kb on - strand at 431.832 kb on - strand at 431.927 kb on + strand, within GFF420 at 431.927 kb on + strand, within GFF420 at 431.927 kb on + strand, within GFF420 at 431.948 kb on + strand, within GFF420 at 431.948 kb on + strand, within GFF420 at 432.082 kb on + strand, within GFF420 at 432.082 kb on + strand, within GFF420 at 432.082 kb on + strand, within GFF420 at 432.082 kb on + strand, within GFF420 at 432.083 kb on - strand, within GFF420 at 432.083 kb on - strand, within GFF420 at 432.083 kb on - strand, within GFF420 at 432.227 kb on + strand, within GFF420 at 432.269 kb on + strand, within GFF420 at 432.297 kb on - strand, within GFF420 at 432.308 kb on + strand, within GFF420 at 432.309 kb on - strand, within GFF420 at 432.309 kb on - strand, within GFF420 at 432.309 kb on - strand, within GFF420 at 432.323 kb on + strand, within GFF420 at 432.323 kb on + strand, within GFF420 at 432.324 kb on - strand, within GFF420 at 432.626 kb on + strand, within GFF420
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 429,403 + GFF418 0.36 +0.4 429,404 - GFF418 0.36 +0.1 429,404 - GFF418 0.36 +0.2 429,404 - GFF418 0.36 -0.2 429,404 - GFF418 0.36 +2.2 429,405 + GFF418 0.36 +0.6 429,405 + GFF418 0.36 -0.2 429,406 - GFF418 0.36 -0.3 429,408 + GFF418 0.37 -0.0 429,409 - GFF418 0.37 +0.4 429,409 - GFF418 0.37 +1.1 429,414 + GFF418 0.37 +0.6 429,414 + GFF418 0.37 -0.4 429,414 + GFF418 0.37 +0.3 429,415 - GFF418 0.37 +0.9 429,580 + GFF418 0.53 +0.6 429,685 - GFF418 0.63 +1.0 430,102 + +0.3 430,103 - +0.2 430,103 - +0.5 430,292 - +0.4 430,292 - +0.2 430,292 - -1.0 430,292 - -0.3 430,393 + GFF419 0.14 -0.4 430,393 + GFF419 0.14 -0.1 430,393 + GFF419 0.14 +0.4 430,393 + GFF419 0.14 -0.0 430,393 + GFF419 0.14 -0.2 430,394 - GFF419 0.14 +0.1 430,405 + GFF419 0.15 -0.1 430,405 + GFF419 0.15 +0.3 430,405 + GFF419 0.15 -0.5 430,799 - GFF419 0.42 +0.9 430,816 + GFF419 0.43 -0.1 430,982 - GFF419 0.54 -0.7 431,554 + +0.2 431,555 - +1.4 431,831 + +0.3 431,831 + -0.6 431,831 + -0.1 431,831 + -0.0 431,832 - -0.0 431,832 - +0.2 431,927 + GFF420 0.13 -0.9 431,927 + GFF420 0.13 -0.5 431,927 + GFF420 0.13 +0.5 431,948 + GFF420 0.15 +0.7 431,948 + GFF420 0.15 +0.2 432,082 + GFF420 0.24 +0.8 432,082 + GFF420 0.24 -0.8 432,082 + GFF420 0.24 +0.5 432,082 + GFF420 0.24 +0.6 432,083 - GFF420 0.25 +0.5 432,083 - GFF420 0.25 +0.8 432,083 - GFF420 0.25 +0.3 432,227 + GFF420 0.35 +0.2 432,269 + GFF420 0.38 +0.6 432,297 - GFF420 0.40 -0.3 432,308 + GFF420 0.41 -0.1 432,309 - GFF420 0.41 +0.8 432,309 - GFF420 0.41 +0.8 432,309 - GFF420 0.41 -0.5 432,323 + GFF420 0.42 -0.1 432,323 + GFF420 0.42 -0.0 432,324 - GFF420 0.42 +0.1 432,626 + GFF420 0.65 -0.8
Or see this region's nucleotide sequence