Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4181 and GFF4182 are separated by 255 nucleotides GFF4182 and GFF4183 are separated by 89 nucleotides GFF4183 and GFF4184 are separated by 61 nucleotides GFF4184 and GFF4185 are separated by 203 nucleotides
GFF4181 - GTP-binding protein TypA/BipA, at 196,216 to 198,045
GFF4181
GFF4182 - hypothetical protein, at 198,301 to 198,738
GFF4182
GFF4183 - hypothetical protein, at 198,828 to 200,210
GFF4183
GFF4184 - hypothetical protein, at 200,272 to 200,592
GFF4184
GFF4185 - putative protein, at 200,796 to 201,932
GFF4185
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -1
0
1 at 198.103 kb on - strand at 198.392 kb on + strand, within GFF4182 at 198.407 kb on - strand, within GFF4182 at 198.527 kb on - strand, within GFF4182 at 198.563 kb on - strand, within GFF4182 at 198.563 kb on - strand, within GFF4182 at 198.566 kb on - strand, within GFF4182 at 198.736 kb on + strand at 198.769 kb on + strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.794 kb on + strand at 198.794 kb on + strand at 198.795 kb on - strand at 198.796 kb on + strand at 198.797 kb on - strand at 198.797 kb on - strand at 198.797 kb on - strand at 198.797 kb on - strand at 198.930 kb on + strand at 198.930 kb on + strand at 199.089 kb on + strand, within GFF4183 at 199.090 kb on - strand, within GFF4183 at 199.090 kb on - strand, within GFF4183 at 199.090 kb on - strand, within GFF4183 at 199.320 kb on + strand, within GFF4183 at 199.320 kb on + strand, within GFF4183 at 199.320 kb on + strand, within GFF4183 at 199.320 kb on + strand, within GFF4183 at 199.320 kb on + strand, within GFF4183 at 199.596 kb on + strand, within GFF4183 at 199.602 kb on + strand, within GFF4183 at 199.842 kb on + strand, within GFF4183 at 199.860 kb on - strand, within GFF4183 at 200.734 kb on - strand at 200.767 kb on - strand at 200.828 kb on + strand at 200.829 kb on - strand at 200.917 kb on - strand, within GFF4185 at 200.931 kb on + strand, within GFF4185 at 200.932 kb on - strand, within GFF4185 at 200.934 kb on - strand, within GFF4185 at 201.036 kb on + strand, within GFF4185
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 198,103 - -0.1 198,392 + GFF4182 0.21 -0.4 198,407 - GFF4182 0.24 +0.7 198,527 - GFF4182 0.52 -0.0 198,563 - GFF4182 0.60 +0.4 198,563 - GFF4182 0.60 -1.2 198,566 - GFF4182 0.61 -0.2 198,736 + -0.0 198,769 + +0.7 198,770 - -0.1 198,770 - +0.1 198,794 + +1.2 198,794 + -0.6 198,795 - +0.5 198,796 + -1.1 198,797 - +0.2 198,797 - -0.7 198,797 - +1.3 198,797 - -0.2 198,930 + +0.4 198,930 + +0.5 199,089 + GFF4183 0.19 +0.0 199,090 - GFF4183 0.19 +0.4 199,090 - GFF4183 0.19 -0.6 199,090 - GFF4183 0.19 +0.6 199,320 + GFF4183 0.36 -0.4 199,320 + GFF4183 0.36 +0.7 199,320 + GFF4183 0.36 +0.7 199,320 + GFF4183 0.36 +0.5 199,320 + GFF4183 0.36 +0.3 199,596 + GFF4183 0.56 -0.4 199,602 + GFF4183 0.56 +1.0 199,842 + GFF4183 0.73 -0.3 199,860 - GFF4183 0.75 +1.7 200,734 - +0.4 200,767 - +0.4 200,828 + -0.5 200,829 - +0.5 200,917 - GFF4185 0.11 -0.7 200,931 + GFF4185 0.12 +0.5 200,932 - GFF4185 0.12 -0.0 200,934 - GFF4185 0.12 +0.1 201,036 + GFF4185 0.21 -0.6
Or see this region's nucleotide sequence