Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4176 and GFF4177 are separated by 5 nucleotides GFF4177 and GFF4178 are separated by 30 nucleotides
GFF4176 - hypothetical protein, at 191,421 to 192,392
GFF4176
GFF4177 - hypothetical protein, at 192,398 to 192,631
GFF4177
GFF4178 - Fumarate reductase flavoprotein subunit, at 192,662 to 194,410
GFF4178
Position (kb) 192
193 Strain fitness (log2 ratio) -2
-1
0
1 at 191.488 kb on + strand at 191.728 kb on + strand, within GFF4176 at 191.728 kb on + strand, within GFF4176 at 191.828 kb on + strand, within GFF4176 at 191.906 kb on - strand, within GFF4176 at 192.411 kb on + strand at 192.411 kb on + strand at 192.468 kb on + strand, within GFF4177 at 192.468 kb on + strand, within GFF4177 at 192.484 kb on - strand, within GFF4177 at 192.484 kb on - strand, within GFF4177 at 192.484 kb on - strand, within GFF4177 at 192.700 kb on - strand at 192.735 kb on + strand at 192.735 kb on + strand at 192.735 kb on + strand at 192.735 kb on + strand at 192.786 kb on + strand at 192.787 kb on - strand at 192.787 kb on - strand at 192.787 kb on - strand at 192.787 kb on - strand at 192.787 kb on - strand at 192.787 kb on - strand at 192.877 kb on - strand, within GFF4178 at 193.047 kb on + strand, within GFF4178 at 193.048 kb on - strand, within GFF4178 at 193.074 kb on + strand, within GFF4178 at 193.074 kb on + strand, within GFF4178 at 193.074 kb on + strand, within GFF4178 at 193.075 kb on - strand, within GFF4178 at 193.161 kb on + strand, within GFF4178 at 193.162 kb on - strand, within GFF4178 at 193.188 kb on + strand, within GFF4178 at 193.188 kb on + strand, within GFF4178 at 193.188 kb on + strand, within GFF4178 at 193.189 kb on - strand, within GFF4178 at 193.189 kb on - strand, within GFF4178 at 193.242 kb on + strand, within GFF4178 at 193.242 kb on + strand, within GFF4178 at 193.242 kb on + strand, within GFF4178 at 193.242 kb on + strand, within GFF4178 at 193.243 kb on - strand, within GFF4178 at 193.243 kb on - strand, within GFF4178 at 193.278 kb on + strand, within GFF4178 at 193.279 kb on - strand, within GFF4178 at 193.390 kb on - strand, within GFF4178 at 193.390 kb on - strand, within GFF4178 at 193.534 kb on - strand, within GFF4178 at 193.540 kb on - strand, within GFF4178 at 193.563 kb on + strand, within GFF4178 at 193.605 kb on + strand, within GFF4178 at 193.605 kb on + strand, within GFF4178 at 193.629 kb on + strand, within GFF4178 at 193.630 kb on - strand, within GFF4178
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 191,488 + -0.1 191,728 + GFF4176 0.32 -1.4 191,728 + GFF4176 0.32 -0.3 191,828 + GFF4176 0.42 -0.4 191,906 - GFF4176 0.50 +0.8 192,411 + +0.6 192,411 + -0.7 192,468 + GFF4177 0.30 +0.1 192,468 + GFF4177 0.30 -0.0 192,484 - GFF4177 0.37 +1.0 192,484 - GFF4177 0.37 +0.4 192,484 - GFF4177 0.37 +1.3 192,700 - -0.1 192,735 + +0.4 192,735 + -1.0 192,735 + -1.5 192,735 + -0.5 192,786 + -0.5 192,787 - +0.1 192,787 - -0.2 192,787 - +0.4 192,787 - +0.2 192,787 - +0.2 192,787 - -2.0 192,877 - GFF4178 0.12 +0.1 193,047 + GFF4178 0.22 -1.4 193,048 - GFF4178 0.22 -0.1 193,074 + GFF4178 0.24 -0.7 193,074 + GFF4178 0.24 +0.1 193,074 + GFF4178 0.24 +0.7 193,075 - GFF4178 0.24 +0.2 193,161 + GFF4178 0.29 +0.8 193,162 - GFF4178 0.29 +0.1 193,188 + GFF4178 0.30 -0.1 193,188 + GFF4178 0.30 -0.2 193,188 + GFF4178 0.30 +1.1 193,189 - GFF4178 0.30 +0.0 193,189 - GFF4178 0.30 +0.3 193,242 + GFF4178 0.33 +0.4 193,242 + GFF4178 0.33 -0.3 193,242 + GFF4178 0.33 +0.1 193,242 + GFF4178 0.33 +0.5 193,243 - GFF4178 0.33 +0.5 193,243 - GFF4178 0.33 -0.8 193,278 + GFF4178 0.35 +0.4 193,279 - GFF4178 0.35 +0.5 193,390 - GFF4178 0.42 +0.1 193,390 - GFF4178 0.42 -0.0 193,534 - GFF4178 0.50 -0.3 193,540 - GFF4178 0.50 +0.3 193,563 + GFF4178 0.52 -0.9 193,605 + GFF4178 0.54 -0.8 193,605 + GFF4178 0.54 -1.8 193,629 + GFF4178 0.55 -0.4 193,630 - GFF4178 0.55 +0.2
Or see this region's nucleotide sequence