Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4173 and GFF4174 are separated by 219 nucleotides GFF4174 and GFF4175 are separated by 52 nucleotides
GFF4173 - HTH-type transcriptional regulator XynR, at 187,478 to 188,374
GFF4173
GFF4174 - Sialic acid-binding periplasmic protein SiaP, at 188,594 to 189,625
GFF4174
GFF4175 - Oligo-1,6-glucosidase, at 189,678 to 191,303
GFF4175
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 187.704 kb on + strand, within GFF4173 at 187.704 kb on + strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.725 kb on + strand, within GFF4173 at 187.726 kb on - strand, within GFF4173 at 187.785 kb on + strand, within GFF4173 at 188.079 kb on + strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.100 kb on + strand, within GFF4173 at 188.100 kb on + strand, within GFF4173 at 188.100 kb on + strand, within GFF4173 at 188.711 kb on + strand, within GFF4174 at 188.718 kb on - strand, within GFF4174 at 188.718 kb on - strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.219 kb on - strand, within GFF4174 at 189.219 kb on - strand, within GFF4174 at 189.572 kb on + strand at 189.573 kb on - strand at 189.573 kb on - strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.605 kb on + strand at 189.725 kb on + strand at 189.725 kb on + strand at 189.874 kb on + strand, within GFF4175 at 189.874 kb on + strand, within GFF4175 at 189.874 kb on + strand, within GFF4175 at 189.874 kb on + strand, within GFF4175 at 189.875 kb on - strand, within GFF4175 at 190.207 kb on + strand, within GFF4175 at 190.208 kb on - strand, within GFF4175 at 190.208 kb on - strand, within GFF4175 at 190.450 kb on + strand, within GFF4175 at 190.450 kb on + strand, within GFF4175 at 190.451 kb on - strand, within GFF4175 at 190.477 kb on + strand, within GFF4175 at 190.572 kb on - strand, within GFF4175 at 190.573 kb on + strand, within GFF4175 at 190.574 kb on - strand, within GFF4175 at 190.574 kb on - strand, within GFF4175 at 190.574 kb on - strand, within GFF4175 at 190.574 kb on - strand, within GFF4175
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 187,704 + GFF4173 0.25 +0.7 187,704 + GFF4173 0.25 -2.2 187,705 - GFF4173 0.25 +0.2 187,705 - GFF4173 0.25 -0.6 187,705 - GFF4173 0.25 +0.3 187,705 - GFF4173 0.25 +0.1 187,705 - GFF4173 0.25 -0.3 187,705 - GFF4173 0.25 -0.5 187,725 + GFF4173 0.28 -1.6 187,726 - GFF4173 0.28 +0.3 187,785 + GFF4173 0.34 +0.2 188,079 + GFF4173 0.67 -1.0 188,080 - GFF4173 0.67 +1.0 188,080 - GFF4173 0.67 +0.4 188,080 - GFF4173 0.67 -0.5 188,080 - GFF4173 0.67 -0.2 188,100 + GFF4173 0.69 -0.6 188,100 + GFF4173 0.69 -0.4 188,100 + GFF4173 0.69 +0.1 188,711 + GFF4174 0.11 -1.0 188,718 - GFF4174 0.12 +0.5 188,718 - GFF4174 0.12 +0.1 189,008 + GFF4174 0.40 +0.1 189,008 + GFF4174 0.40 -0.8 189,008 + GFF4174 0.40 +0.1 189,009 - GFF4174 0.40 +0.7 189,009 - GFF4174 0.40 +0.4 189,009 - GFF4174 0.40 -0.0 189,009 - GFF4174 0.40 -0.3 189,219 - GFF4174 0.61 -0.4 189,219 - GFF4174 0.61 -1.2 189,572 + +0.7 189,573 - +0.4 189,573 - +0.2 189,605 + -0.5 189,605 + -0.4 189,605 + -1.2 189,725 + -0.0 189,725 + +0.0 189,874 + GFF4175 0.12 -0.8 189,874 + GFF4175 0.12 -0.3 189,874 + GFF4175 0.12 -1.3 189,874 + GFF4175 0.12 -0.4 189,875 - GFF4175 0.12 -0.3 190,207 + GFF4175 0.33 -0.1 190,208 - GFF4175 0.33 +0.6 190,208 - GFF4175 0.33 +0.6 190,450 + GFF4175 0.47 +0.4 190,450 + GFF4175 0.47 -0.5 190,451 - GFF4175 0.48 +0.8 190,477 + GFF4175 0.49 +0.4 190,572 - GFF4175 0.55 +0.9 190,573 + GFF4175 0.55 +0.1 190,574 - GFF4175 0.55 +0.2 190,574 - GFF4175 0.55 +0.8 190,574 - GFF4175 0.55 -1.1 190,574 - GFF4175 0.55 -0.3
Or see this region's nucleotide sequence