Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4172 and GFF4173 are separated by 26 nucleotides GFF4173 and GFF4174 are separated by 219 nucleotides
GFF4172 - Long-chain-fatty-acid--CoA ligase FadD13, at 185,832 to 187,451
GFF4172
GFF4173 - HTH-type transcriptional regulator XynR, at 187,478 to 188,374
GFF4173
GFF4174 - Sialic acid-binding periplasmic protein SiaP, at 188,594 to 189,625
GFF4174
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1 at 186.542 kb on - strand, within GFF4172 at 186.542 kb on - strand, within GFF4172 at 186.551 kb on - strand, within GFF4172 at 186.825 kb on + strand, within GFF4172 at 186.825 kb on + strand, within GFF4172 at 186.825 kb on + strand, within GFF4172 at 186.973 kb on + strand, within GFF4172 at 186.974 kb on - strand, within GFF4172 at 186.974 kb on - strand, within GFF4172 at 187.108 kb on + strand, within GFF4172 at 187.109 kb on - strand, within GFF4172 at 187.332 kb on - strand at 187.332 kb on - strand at 187.704 kb on + strand, within GFF4173 at 187.704 kb on + strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.725 kb on + strand, within GFF4173 at 187.726 kb on - strand, within GFF4173 at 187.785 kb on + strand, within GFF4173 at 188.079 kb on + strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.100 kb on + strand, within GFF4173 at 188.100 kb on + strand, within GFF4173 at 188.100 kb on + strand, within GFF4173 at 188.711 kb on + strand, within GFF4174 at 188.718 kb on - strand, within GFF4174 at 188.718 kb on - strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.008 kb on + strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.009 kb on - strand, within GFF4174 at 189.219 kb on - strand, within GFF4174 at 189.219 kb on - strand, within GFF4174
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 186,542 - GFF4172 0.44 +0.4 186,542 - GFF4172 0.44 +1.0 186,551 - GFF4172 0.44 +0.4 186,825 + GFF4172 0.61 +0.7 186,825 + GFF4172 0.61 -1.2 186,825 + GFF4172 0.61 +0.0 186,973 + GFF4172 0.70 +0.4 186,974 - GFF4172 0.70 +0.3 186,974 - GFF4172 0.70 -0.2 187,108 + GFF4172 0.79 -1.0 187,109 - GFF4172 0.79 +0.3 187,332 - -0.2 187,332 - -0.4 187,704 + GFF4173 0.25 +0.7 187,704 + GFF4173 0.25 -2.2 187,705 - GFF4173 0.25 +0.2 187,705 - GFF4173 0.25 -0.6 187,705 - GFF4173 0.25 +0.3 187,705 - GFF4173 0.25 +0.1 187,705 - GFF4173 0.25 -0.3 187,705 - GFF4173 0.25 -0.5 187,725 + GFF4173 0.28 -1.6 187,726 - GFF4173 0.28 +0.3 187,785 + GFF4173 0.34 +0.2 188,079 + GFF4173 0.67 -1.0 188,080 - GFF4173 0.67 +1.0 188,080 - GFF4173 0.67 +0.4 188,080 - GFF4173 0.67 -0.5 188,080 - GFF4173 0.67 -0.2 188,100 + GFF4173 0.69 -0.6 188,100 + GFF4173 0.69 -0.4 188,100 + GFF4173 0.69 +0.1 188,711 + GFF4174 0.11 -1.0 188,718 - GFF4174 0.12 +0.5 188,718 - GFF4174 0.12 +0.1 189,008 + GFF4174 0.40 +0.1 189,008 + GFF4174 0.40 -0.8 189,008 + GFF4174 0.40 +0.1 189,009 - GFF4174 0.40 +0.7 189,009 - GFF4174 0.40 +0.4 189,009 - GFF4174 0.40 -0.0 189,009 - GFF4174 0.40 -0.3 189,219 - GFF4174 0.61 -0.4 189,219 - GFF4174 0.61 -1.2
Or see this region's nucleotide sequence