Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4134 and GFF4135 are separated by 288 nucleotides GFF4135 and GFF4136 are separated by 184 nucleotides
GFF4134 - Transcriptional regulatory protein BaeR, at 139,246 to 139,944
GFF4134
GFF4135 - hypothetical protein, at 140,233 to 140,949
GFF4135
GFF4136 - Phosphoenolpyruvate carboxykinase (ATP), at 141,134 to 142,747
GFF4136
Position (kb) 140
141 Strain fitness (log2 ratio) -1
0
1 at 140.123 kb on - strand at 140.590 kb on + strand, within GFF4135 at 140.590 kb on + strand, within GFF4135 at 140.591 kb on - strand, within GFF4135 at 140.758 kb on + strand, within GFF4135 at 141.004 kb on - strand at 141.004 kb on - strand at 141.065 kb on + strand at 141.066 kb on - strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.071 kb on + strand at 141.233 kb on + strand at 141.379 kb on + strand, within GFF4136 at 141.470 kb on + strand, within GFF4136 at 141.471 kb on - strand, within GFF4136 at 141.512 kb on + strand, within GFF4136 at 141.513 kb on - strand, within GFF4136 at 141.514 kb on + strand, within GFF4136 at 141.716 kb on + strand, within GFF4136 at 141.716 kb on + strand, within GFF4136 at 141.717 kb on - strand, within GFF4136 at 141.717 kb on - strand, within GFF4136 at 141.758 kb on + strand, within GFF4136 at 141.758 kb on + strand, within GFF4136 at 141.759 kb on - strand, within GFF4136 at 141.759 kb on - strand, within GFF4136
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 140,123 - -0.6 140,590 + GFF4135 0.50 +0.9 140,590 + GFF4135 0.50 +0.2 140,591 - GFF4135 0.50 +0.1 140,758 + GFF4135 0.73 -0.0 141,004 - -0.7 141,004 - +0.7 141,065 + -0.7 141,066 - +0.1 141,071 + +1.1 141,071 + -0.0 141,071 + -0.6 141,071 + -0.3 141,071 + +0.2 141,071 + -0.7 141,233 + -0.1 141,379 + GFF4136 0.15 +0.2 141,470 + GFF4136 0.21 -0.9 141,471 - GFF4136 0.21 +0.4 141,512 + GFF4136 0.23 -0.3 141,513 - GFF4136 0.23 +0.1 141,514 + GFF4136 0.24 -1.1 141,716 + GFF4136 0.36 +0.1 141,716 + GFF4136 0.36 +0.3 141,717 - GFF4136 0.36 +0.8 141,717 - GFF4136 0.36 +0.4 141,758 + GFF4136 0.39 -0.3 141,758 + GFF4136 0.39 +0.2 141,759 - GFF4136 0.39 -0.2 141,759 - GFF4136 0.39 -1.4
Or see this region's nucleotide sequence