Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4125 and GFF4126 are separated by 9 nucleotides GFF4126 and GFF4127 are separated by 203 nucleotides GFF4127 and GFF4128 are separated by 382 nucleotides GFF4128 and GFF4129 overlap by 6 nucleotides
GFF4125 - hypothetical protein, at 129,490 to 129,795
GFF4125
GFF4126 - hypothetical protein, at 129,805 to 129,933
GFF4126
GFF4127 - Cold shock protein CspA, at 130,137 to 130,349
GFF4127
GFF4128 - hypothetical protein, at 130,732 to 131,595
GFF4128
GFF4129 - Na(+)/H(+) antiporter NhaA, at 131,590 to 132,936
GFF4129
Position (kb) 130
131
132 Strain fitness (log2 ratio) -1
0
1 at 129.884 kb on + strand, within GFF4126 at 129.959 kb on + strand at 129.959 kb on + strand at 129.960 kb on - strand at 129.960 kb on - strand at 130.064 kb on - strand at 130.376 kb on - strand at 130.478 kb on + strand at 130.479 kb on - strand at 130.523 kb on + strand at 130.565 kb on + strand at 130.567 kb on + strand at 130.567 kb on + strand at 130.567 kb on + strand at 130.568 kb on - strand at 130.568 kb on - strand at 130.568 kb on - strand at 130.568 kb on - strand at 130.765 kb on + strand at 130.766 kb on - strand at 130.766 kb on - strand at 130.766 kb on - strand at 130.790 kb on + strand at 131.041 kb on + strand, within GFF4128 at 131.042 kb on - strand, within GFF4128 at 131.042 kb on - strand, within GFF4128 at 131.042 kb on - strand, within GFF4128 at 131.206 kb on + strand, within GFF4128 at 131.207 kb on - strand, within GFF4128 at 131.350 kb on + strand, within GFF4128 at 131.351 kb on - strand, within GFF4128 at 131.351 kb on - strand, within GFF4128 at 131.538 kb on + strand at 131.538 kb on + strand at 132.104 kb on + strand, within GFF4129 at 132.122 kb on + strand, within GFF4129 at 132.139 kb on + strand, within GFF4129 at 132.139 kb on + strand, within GFF4129 at 132.139 kb on + strand, within GFF4129 at 132.140 kb on - strand, within GFF4129 at 132.140 kb on - strand, within GFF4129 at 132.185 kb on - strand, within GFF4129 at 132.254 kb on + strand, within GFF4129 at 132.254 kb on + strand, within GFF4129 at 132.254 kb on + strand, within GFF4129 at 132.254 kb on + strand, within GFF4129 at 132.255 kb on - strand, within GFF4129 at 132.353 kb on + strand, within GFF4129 at 132.478 kb on - strand, within GFF4129
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 129,884 + GFF4126 0.61 +0.3 129,959 + +0.3 129,959 + -0.0 129,960 - +0.4 129,960 - -0.1 130,064 - -0.1 130,376 - +0.7 130,478 + -0.4 130,479 - -0.3 130,523 + +1.1 130,565 + -0.1 130,567 + -0.2 130,567 + -0.0 130,567 + -1.5 130,568 - -0.2 130,568 - -0.2 130,568 - +0.5 130,568 - +0.7 130,765 + +1.4 130,766 - +1.1 130,766 - -0.4 130,766 - -0.7 130,790 + +0.7 131,041 + GFF4128 0.36 +0.4 131,042 - GFF4128 0.36 +0.1 131,042 - GFF4128 0.36 +0.5 131,042 - GFF4128 0.36 +0.6 131,206 + GFF4128 0.55 +0.3 131,207 - GFF4128 0.55 +0.9 131,350 + GFF4128 0.72 +0.7 131,351 - GFF4128 0.72 +0.7 131,351 - GFF4128 0.72 -0.6 131,538 + +0.3 131,538 + -0.5 132,104 + GFF4129 0.38 +0.3 132,122 + GFF4129 0.39 -0.7 132,139 + GFF4129 0.41 +0.1 132,139 + GFF4129 0.41 +1.3 132,139 + GFF4129 0.41 -1.3 132,140 - GFF4129 0.41 -0.5 132,140 - GFF4129 0.41 +1.0 132,185 - GFF4129 0.44 +0.1 132,254 + GFF4129 0.49 +1.2 132,254 + GFF4129 0.49 -0.5 132,254 + GFF4129 0.49 +0.1 132,254 + GFF4129 0.49 +1.1 132,255 - GFF4129 0.49 +0.4 132,353 + GFF4129 0.57 -1.3 132,478 - GFF4129 0.66 -0.1
Or see this region's nucleotide sequence