Strain Fitness in Xanthobacter sp. DMC5 around GFF4122

Experiment: Methanol and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methanol and casaminos (C)
119,234	+		GFF4120	0.70	-0.0
119,234	+		GFF4120	0.70	-0.4
119,620	+				-0.6
119,631	-				-0.2
119,845	-		GFF4121	0.33	+0.7
119,848	+		GFF4121	0.33	+0.1
119,848	+		GFF4121	0.33	+0.7
119,849	-		GFF4121	0.34	-0.3
119,849	-		GFF4121	0.34	-0.1
119,890	+		GFF4121	0.43	+0.0
119,890	+		GFF4121	0.43	+0.9
119,890	+		GFF4121	0.43	+0.3
119,898	+		GFF4121	0.45	-0.6
119,899	-		GFF4121	0.45	+1.0
120,012	+		GFF4121	0.72	+0.3
120,070	+		GFF4121	0.86	+1.1
120,105	-				+0.2
120,271	+				+1.4
120,363	+				-0.4
120,510	+				+1.0
120,511	-				+1.5
120,552	+				-0.3
120,552	+				-0.1
120,552	+				+0.7
120,552	+				+0.5
120,553	-				-0.4
120,573	+				-0.4
120,573	+				-0.4
120,573	+				-1.9
120,589	-				+0.2
120,714	+				+0.2
120,714	+				-0.2
120,714	+				-0.3
120,714	+				+0.1
120,715	-				+0.9
120,748	-				-0.0
120,760	-				+0.2
120,985	-				-0.1
121,063	+				+0.2
121,389	+		GFF4122	0.14	+0.1
121,390	-		GFF4122	0.14	-0.7
121,405	-		GFF4122	0.14	-0.3
121,405	-		GFF4122	0.14	+0.5
121,608	+		GFF4122	0.16	-0.6
121,609	-		GFF4122	0.16	+1.4
121,852	+		GFF4122	0.19	+0.1
122,117	-		GFF4122	0.22	-0.3
122,319	+		GFF4122	0.25	-0.2
122,319	+		GFF4122	0.25	-0.6
122,320	-		GFF4122	0.25	-0.4
122,391	+		GFF4122	0.25	-0.0
122,441	-		GFF4122	0.26	+0.2
122,441	-		GFF4122	0.26	-0.1
122,577	+		GFF4122	0.28	+1.3
122,577	+		GFF4122	0.28	-0.2
122,577	+		GFF4122	0.28	-1.5
122,578	-		GFF4122	0.28	+0.3
122,578	-		GFF4122	0.28	-1.3
122,578	-		GFF4122	0.28	-0.1
122,970	+		GFF4122	0.32	-0.2
122,971	-		GFF4122	0.32	-0.7
123,139	-		GFF4122	0.34	+0.9
123,166	-		GFF4122	0.34	-0.0
123,166	-		GFF4122	0.34	-0.6
123,166	-		GFF4122	0.34	+0.0
123,201	+		GFF4122	0.35	+0.5
123,201	+		GFF4122	0.35	+1.0
123,202	-		GFF4122	0.35	+0.5
123,249	+		GFF4122	0.35	+0.2
123,249	+		GFF4122	0.35	-0.0
123,250	-		GFF4122	0.35	+0.3
123,546	+		GFF4122	0.39	-0.1
123,606	+		GFF4122	0.40	-0.6
123,606	+		GFF4122	0.40	-1.4
123,606	+		GFF4122	0.40	+0.5
123,607	-		GFF4122	0.40	-0.2
123,607	-		GFF4122	0.40	+0.7
123,607	-		GFF4122	0.40	-0.6
123,685	-		GFF4122	0.41	-0.5
123,685	-		GFF4122	0.41	-0.0
123,685	-		GFF4122	0.41	+0.6
123,685	-		GFF4122	0.41	-2.0
123,721	+		GFF4122	0.41	+0.4
123,846	+		GFF4122	0.42	-0.3
123,846	+		GFF4122	0.42	+0.7
123,846	+		GFF4122	0.42	-0.6
123,924	+		GFF4122	0.43	-0.3
123,924	+		GFF4122	0.43	-0.6
123,924	+		GFF4122	0.43	-0.3
123,924	+		GFF4122	0.43	+0.9
123,924	+		GFF4122	0.43	-0.9
123,925	-		GFF4122	0.43	+0.7
123,925	-		GFF4122	0.43	-0.3
123,925	-		GFF4122	0.43	+0.0
123,925	-		GFF4122	0.43	-0.1
123,925	-		GFF4122	0.43	-0.3
123,925	-		GFF4122	0.43	-0.6
123,993	+		GFF4122	0.44	-0.7
123,994	-		GFF4122	0.44	+0.2
124,351	-		GFF4122	0.48	+0.2
124,365	+		GFF4122	0.48	-0.5
124,365	+		GFF4122	0.48	-1.2
124,365	+		GFF4122	0.48	-0.0
124,365	+		GFF4122	0.48	-0.4
124,366	-		GFF4122	0.48	+0.2
124,366	-		GFF4122	0.48	-0.8
124,366	-		GFF4122	0.48	-0.1
124,462	-		GFF4122	0.50	-0.6
124,530	+		GFF4122	0.50	-0.0
124,531	-		GFF4122	0.50	-0.3
124,531	-		GFF4122	0.50	-0.5
124,536	+		GFF4122	0.50	+0.5
124,537	-		GFF4122	0.50	+0.5
124,537	-		GFF4122	0.50	-0.3
124,537	-		GFF4122	0.50	-0.6
124,537	-		GFF4122	0.50	-0.3
124,564	-		GFF4122	0.51	-0.3
124,564	-		GFF4122	0.51	+0.2
124,609	-		GFF4122	0.51	-1.2
124,695	+		GFF4122	0.52	-0.3
124,849	-		GFF4122	0.54	-0.1
124,849	-		GFF4122	0.54	+0.3
125,014	-		GFF4122	0.56	-0.4
125,014	-		GFF4122	0.56	+0.2
125,014	-		GFF4122	0.56	+0.3
125,124	+		GFF4122	0.57	-1.0
125,431	-		GFF4122	0.61	+0.2
125,466	+		GFF4122	0.61	+0.2
125,467	-		GFF4122	0.61	+0.7
125,467	-		GFF4122	0.61	-0.2
125,595	+		GFF4122	0.63	+0.7
125,595	+		GFF4122	0.63	-0.7
125,596	-		GFF4122	0.63	+1.1
125,596	-		GFF4122	0.63	-0.0
126,063	+		GFF4122	0.68	-0.9
126,083	+		GFF4122	0.69	-0.6
126,603	+		GFF4122	0.75	-0.2
126,621	+		GFF4122	0.75	+0.1
126,621	+		GFF4122	0.75	+2.9
126,621	+		GFF4122	0.75	+0.8
126,621	+		GFF4122	0.75	-0.1
126,621	+		GFF4122	0.75	-2.0
126,622	-		GFF4122	0.75	-0.6
126,622	-		GFF4122	0.75	+0.1
126,648	+		GFF4122	0.75	-0.2
126,648	+		GFF4122	0.75	+0.7
126,673	-		GFF4122	0.75	-1.2
126,897	+		GFF4122	0.78	-0.5
126,898	-		GFF4122	0.78	+0.1
126,898	-		GFF4122	0.78	-0.4
127,441	+		GFF4122	0.84	+0.1
127,533	+		GFF4122	0.85	-0.9
127,533	+		GFF4122	0.85	-1.0
127,533	+		GFF4122	0.85	+1.0
127,534	-		GFF4122	0.85	+0.7
127,638	+		GFF4122	0.87	-0.2
127,639	-		GFF4122	0.87	-0.2
127,641	+		GFF4122	0.87	+0.3
127,815	+		GFF4122	0.89	-0.2
127,945	+				+1.0
128,100	+				-0.5
128,101	-				+0.3
128,304	+				-0.6
128,304	+				+0.3
128,305	-				+0.0
128,305	-				+0.2
128,305	-				+0.0
128,316	+				+0.8
128,317	-				-0.3
128,317	-				+0.1
128,437	-				-0.3
128,437	-				+0.1
128,439	+				-0.3
128,494	-				+0.2
128,494	-				+0.6
128,763	-				+0.3
128,788	+				-0.3
128,788	+				-0.2
128,881	+				+0.7
129,200	+				+0.2
129,200	+				+0.4
129,201	-				-0.7
129,201	-				-0.2
129,201	-				+0.3
129,249	-		GFF4124	0.19	-0.3
129,707	+		GFF4125	0.71	-0.3
129,707	+		GFF4125	0.71	-0.3
129,707	+		GFF4125	0.71	-0.7
129,707	+		GFF4125	0.71	-1.0
129,707	+		GFF4125	0.71	-0.2
129,707	+		GFF4125	0.71	-0.2
129,708	-		GFF4125	0.71	-0.1
129,708	-		GFF4125	0.71	+0.4