Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4102 and GFF4103 overlap by 4 nucleotides GFF4103 and GFF4104 are separated by 99 nucleotides GFF4104 and GFF4105 are separated by 21 nucleotides GFF4105 and GFF4106 overlap by 8 nucleotides
GFF4102 - hypothetical protein, at 94,765 to 95,745
GFF4102
GFF4103 - High-affinity branched-chain amino acid transport system permease protein LivH, at 95,742 to 96,614
GFF4103
GFF4104 - hypothetical protein, at 96,714 to 97,520
GFF4104
GFF4105 - hypothetical protein, at 97,542 to 97,883
GFF4105
GFF4106 - P-loop guanosine triphosphatase YjiA, at 97,876 to 98,910
GFF4106
Position (kb) 96
97
98 Strain fitness (log2 ratio) -1
0
1
2 at 96.056 kb on - strand, within GFF4103 at 96.056 kb on - strand, within GFF4103 at 96.056 kb on - strand, within GFF4103 at 96.056 kb on - strand, within GFF4103 at 96.247 kb on + strand, within GFF4103 at 96.248 kb on - strand, within GFF4103 at 96.470 kb on - strand, within GFF4103 at 96.470 kb on - strand, within GFF4103 at 96.479 kb on - strand, within GFF4103 at 96.479 kb on - strand, within GFF4103 at 96.479 kb on - strand, within GFF4103 at 96.479 kb on - strand, within GFF4103 at 96.828 kb on + strand, within GFF4104 at 96.829 kb on - strand, within GFF4104 at 97.242 kb on + strand, within GFF4104 at 97.242 kb on + strand, within GFF4104 at 97.242 kb on + strand, within GFF4104 at 97.242 kb on + strand, within GFF4104 at 97.242 kb on + strand, within GFF4104 at 97.242 kb on + strand, within GFF4104 at 97.243 kb on - strand, within GFF4104 at 97.243 kb on - strand, within GFF4104 at 97.293 kb on + strand, within GFF4104 at 97.293 kb on + strand, within GFF4104 at 97.293 kb on + strand, within GFF4104 at 97.293 kb on + strand, within GFF4104 at 97.294 kb on - strand, within GFF4104 at 97.294 kb on - strand, within GFF4104 at 97.294 kb on - strand, within GFF4104 at 97.294 kb on - strand, within GFF4104 at 97.320 kb on + strand, within GFF4104 at 97.321 kb on - strand, within GFF4104 at 97.321 kb on - strand, within GFF4104 at 97.321 kb on - strand, within GFF4104 at 97.638 kb on + strand, within GFF4105
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 96,056 - GFF4103 0.36 -0.3 96,056 - GFF4103 0.36 -0.6 96,056 - GFF4103 0.36 -1.0 96,056 - GFF4103 0.36 +0.5 96,247 + GFF4103 0.58 +1.9 96,248 - GFF4103 0.58 -0.6 96,470 - GFF4103 0.83 -0.4 96,470 - GFF4103 0.83 -0.7 96,479 - GFF4103 0.84 -0.6 96,479 - GFF4103 0.84 -0.7 96,479 - GFF4103 0.84 -1.4 96,479 - GFF4103 0.84 -0.3 96,828 + GFF4104 0.14 +0.2 96,829 - GFF4104 0.14 +0.6 97,242 + GFF4104 0.65 +0.6 97,242 + GFF4104 0.65 +0.6 97,242 + GFF4104 0.65 +1.1 97,242 + GFF4104 0.65 +0.1 97,242 + GFF4104 0.65 +0.4 97,242 + GFF4104 0.65 +0.5 97,243 - GFF4104 0.66 +0.6 97,243 - GFF4104 0.66 +0.3 97,293 + GFF4104 0.72 +0.5 97,293 + GFF4104 0.72 +0.8 97,293 + GFF4104 0.72 +0.7 97,293 + GFF4104 0.72 +0.5 97,294 - GFF4104 0.72 -0.0 97,294 - GFF4104 0.72 +0.6 97,294 - GFF4104 0.72 +0.5 97,294 - GFF4104 0.72 +0.5 97,320 + GFF4104 0.75 +2.1 97,321 - GFF4104 0.75 +1.4 97,321 - GFF4104 0.75 +0.5 97,321 - GFF4104 0.75 +0.8 97,638 + GFF4105 0.28 -0.1
Or see this region's nucleotide sequence