Strain Fitness in Xanthobacter sp. DMC5 around GFF4093

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4092 and GFF4093 are separated by 104 nucleotidesGFF4093 and GFF4094 are separated by 40 nucleotidesGFF4094 and GFF4095 overlap by 8 nucleotides GFF4092 - hypothetical protein, at 84,699 to 85,715 GFF4092 GFF4093 - Ribonuclease Z, at 85,820 to 86,704 GFF4093 GFF4094 - hypothetical protein, at 86,745 to 87,644 GFF4094 GFF4095 - Bicarbonate transport ATP-binding protein CmpD, at 87,637 to 88,455 GFF4095 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.964 kb on + strand, within GFF4092at 84.965 kb on - strand, within GFF4092at 84.965 kb on - strand, within GFF4092at 85.015 kb on + strand, within GFF4092at 85.015 kb on + strand, within GFF4092at 85.016 kb on - strand, within GFF4092at 85.016 kb on - strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.054 kb on + strand, within GFF4092at 85.055 kb on - strand, within GFF4092at 85.055 kb on - strand, within GFF4092at 85.055 kb on - strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.070 kb on + strand, within GFF4092at 85.071 kb on - strand, within GFF4092at 85.208 kb on + strand, within GFF4092at 85.208 kb on + strand, within GFF4092at 85.351 kb on + strand, within GFF4092at 85.351 kb on + strand, within GFF4092at 85.351 kb on + strand, within GFF4092at 85.351 kb on + strand, within GFF4092at 85.352 kb on - strand, within GFF4092at 85.352 kb on - strand, within GFF4092at 85.510 kb on + strand, within GFF4092at 85.510 kb on + strand, within GFF4092at 85.511 kb on - strand, within GFF4092at 85.594 kb on + strand, within GFF4092at 85.594 kb on + strand, within GFF4092at 85.595 kb on - strand, within GFF4092at 85.689 kb on + strandat 85.971 kb on + strand, within GFF4093at 86.052 kb on + strand, within GFF4093at 86.052 kb on + strand, within GFF4093at 86.052 kb on + strand, within GFF4093at 86.053 kb on - strand, within GFF4093at 86.053 kb on - strand, within GFF4093at 86.278 kb on + strand, within GFF4093at 86.283 kb on + strand, within GFF4093at 86.379 kb on + strand, within GFF4093at 86.380 kb on - strand, within GFF4093at 86.380 kb on - strand, within GFF4093at 86.500 kb on - strand, within GFF4093at 86.517 kb on + strand, within GFF4093at 86.517 kb on + strand, within GFF4093at 86.518 kb on - strand, within GFF4093at 86.518 kb on - strand, within GFF4093at 86.640 kb on + strandat 86.698 kb on + strandat 86.699 kb on - strandat 86.699 kb on - strandat 86.729 kb on + strandat 86.729 kb on + strandat 86.730 kb on - strandat 86.730 kb on - strandat 86.730 kb on - strandat 87.034 kb on + strand, within GFF4094at 87.034 kb on + strand, within GFF4094at 87.035 kb on - strand, within GFF4094at 87.056 kb on - strand, within GFF4094at 87.056 kb on - strand, within GFF4094at 87.056 kb on - strand, within GFF4094at 87.056 kb on - strand, within GFF4094at 87.056 kb on - strand, within GFF4094at 87.056 kb on - strand, within GFF4094at 87.056 kb on - strand, within GFF4094at 87.319 kb on + strand, within GFF4094at 87.319 kb on + strand, within GFF4094at 87.320 kb on - strand, within GFF4094at 87.320 kb on - strand, within GFF4094at 87.451 kb on + strand, within GFF4094at 87.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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84,964 + GFF4092 0.26 +0.1
84,964 + GFF4092 0.26 +1.3
84,964 + GFF4092 0.26 +0.4
84,964 + GFF4092 0.26 +0.2
84,964 + GFF4092 0.26 -0.4
84,964 + GFF4092 0.26 -0.2
84,965 - GFF4092 0.26 -1.9
84,965 - GFF4092 0.26 -0.6
85,015 + GFF4092 0.31 -1.2
85,015 + GFF4092 0.31 +0.2
85,016 - GFF4092 0.31 -0.0
85,016 - GFF4092 0.31 +0.2
85,054 + GFF4092 0.35 -1.0
85,054 + GFF4092 0.35 +1.3
85,054 + GFF4092 0.35 -0.3
85,054 + GFF4092 0.35 +0.3
85,054 + GFF4092 0.35 -0.8
85,054 + GFF4092 0.35 +0.7
85,054 + GFF4092 0.35 -0.1
85,054 + GFF4092 0.35 +1.0
85,054 + GFF4092 0.35 +1.0
85,054 + GFF4092 0.35 -0.3
85,055 - GFF4092 0.35 +0.1
85,055 - GFF4092 0.35 -0.2
85,055 - GFF4092 0.35 -0.6
85,070 + GFF4092 0.36 +0.4
85,070 + GFF4092 0.36 -1.2
85,070 + GFF4092 0.36 -0.3
85,070 + GFF4092 0.36 +0.5
85,070 + GFF4092 0.36 +0.3
85,071 - GFF4092 0.37 +0.3
85,208 + GFF4092 0.50 -1.4
85,208 + GFF4092 0.50 -0.3
85,351 + GFF4092 0.64 +0.4
85,351 + GFF4092 0.64 +0.0
85,351 + GFF4092 0.64 -0.1
85,351 + GFF4092 0.64 -1.0
85,352 - GFF4092 0.64 -0.7
85,352 - GFF4092 0.64 -0.6
85,510 + GFF4092 0.80 +0.1
85,510 + GFF4092 0.80 +0.3
85,511 - GFF4092 0.80 -1.2
85,594 + GFF4092 0.88 -0.1
85,594 + GFF4092 0.88 +0.4
85,595 - GFF4092 0.88 +0.5
85,689 + -0.6
85,971 + GFF4093 0.17 +0.9
86,052 + GFF4093 0.26 +0.7
86,052 + GFF4093 0.26 -0.4
86,052 + GFF4093 0.26 +0.4
86,053 - GFF4093 0.26 -0.9
86,053 - GFF4093 0.26 +0.5
86,278 + GFF4093 0.52 +1.2
86,283 + GFF4093 0.52 -1.0
86,379 + GFF4093 0.63 -0.9
86,380 - GFF4093 0.63 -0.4
86,380 - GFF4093 0.63 -0.0
86,500 - GFF4093 0.77 -0.0
86,517 + GFF4093 0.79 -0.2
86,517 + GFF4093 0.79 -0.2
86,518 - GFF4093 0.79 -0.9
86,518 - GFF4093 0.79 +0.4
86,640 + -0.3
86,698 + +1.4
86,699 - -0.2
86,699 - +0.3
86,729 + -0.1
86,729 + -0.6
86,730 - +1.5
86,730 - +0.0
86,730 - +0.2
87,034 + GFF4094 0.32 +0.1
87,034 + GFF4094 0.32 -0.5
87,035 - GFF4094 0.32 +0.5
87,056 - GFF4094 0.35 -0.6
87,056 - GFF4094 0.35 -0.3
87,056 - GFF4094 0.35 +0.1
87,056 - GFF4094 0.35 +0.1
87,056 - GFF4094 0.35 -0.0
87,056 - GFF4094 0.35 -0.3
87,056 - GFF4094 0.35 +0.4
87,319 + GFF4094 0.64 -0.3
87,319 + GFF4094 0.64 +1.0
87,320 - GFF4094 0.64 +0.8
87,320 - GFF4094 0.64 -0.1
87,451 + GFF4094 0.78 -1.3
87,682 - +0.1

Or see this region's nucleotide sequence