Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4063 and GFF4064 overlap by 4 nucleotides GFF4064 and GFF4065 overlap by 4 nucleotides GFF4065 and GFF4066 are separated by 14 nucleotides
GFF4063 - Acetolactate synthase large subunit IlvG, at 56,325 to 58,004
GFF4063
GFF4064 - 8-methylmenaquinol:fumarate reductase flavoprotein subunit, at 58,001 to 59,731
GFF4064
GFF4065 - L(+)-tartrate dehydratase subunit beta, at 59,728 to 60,339
GFF4065
GFF4066 - L(+)-tartrate dehydratase subunit alpha, at 60,354 to 61,226
GFF4066
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.776 kb on + strand, within GFF4063 at 57.830 kb on - strand, within GFF4063 at 57.850 kb on + strand at 57.850 kb on + strand at 57.850 kb on + strand at 57.851 kb on - strand at 57.851 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.103 kb on - strand at 58.104 kb on + strand at 58.105 kb on - strand at 58.105 kb on - strand at 58.114 kb on + strand at 58.115 kb on - strand at 58.381 kb on - strand, within GFF4064 at 58.539 kb on - strand, within GFF4064 at 58.614 kb on + strand, within GFF4064 at 58.671 kb on + strand, within GFF4064 at 58.671 kb on + strand, within GFF4064 at 58.672 kb on - strand, within GFF4064 at 58.821 kb on + strand, within GFF4064 at 58.821 kb on + strand, within GFF4064 at 58.822 kb on - strand, within GFF4064 at 58.893 kb on + strand, within GFF4064 at 58.893 kb on + strand, within GFF4064 at 58.893 kb on + strand, within GFF4064 at 58.894 kb on - strand, within GFF4064 at 58.894 kb on - strand, within GFF4064 at 58.894 kb on - strand, within GFF4064 at 59.106 kb on + strand, within GFF4064 at 59.106 kb on + strand, within GFF4064 at 59.106 kb on + strand, within GFF4064 at 59.107 kb on - strand, within GFF4064 at 59.112 kb on + strand, within GFF4064 at 59.112 kb on + strand, within GFF4064 at 59.112 kb on + strand, within GFF4064 at 59.112 kb on + strand, within GFF4064 at 59.113 kb on - strand, within GFF4064 at 59.113 kb on - strand, within GFF4064 at 59.113 kb on - strand, within GFF4064 at 59.113 kb on - strand, within GFF4064 at 59.559 kb on + strand at 59.559 kb on + strand at 59.559 kb on + strand at 59.560 kb on - strand at 59.960 kb on + strand, within GFF4065 at 59.960 kb on + strand, within GFF4065 at 59.961 kb on - strand, within GFF4065 at 59.961 kb on - strand, within GFF4065 at 59.961 kb on - strand, within GFF4065 at 60.084 kb on + strand, within GFF4065 at 60.084 kb on + strand, within GFF4065 at 60.085 kb on - strand, within GFF4065 at 60.465 kb on + strand, within GFF4066 at 60.465 kb on + strand, within GFF4066 at 60.466 kb on - strand, within GFF4066 at 60.466 kb on - strand, within GFF4066
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 57,776 + GFF4063 0.86 +0.6 57,830 - GFF4063 0.90 -1.2 57,850 + +0.4 57,850 + -0.0 57,850 + +1.9 57,851 - +0.1 57,851 - -0.6 58,103 - -0.4 58,103 - -0.1 58,103 - -1.4 58,103 - +1.1 58,103 - -1.1 58,103 - +0.8 58,104 + +0.8 58,105 - -0.3 58,105 - +0.1 58,114 + -0.9 58,115 - -0.5 58,381 - GFF4064 0.22 -0.1 58,539 - GFF4064 0.31 +0.4 58,614 + GFF4064 0.35 +0.1 58,671 + GFF4064 0.39 +0.3 58,671 + GFF4064 0.39 -1.0 58,672 - GFF4064 0.39 +0.5 58,821 + GFF4064 0.47 +1.1 58,821 + GFF4064 0.47 -0.3 58,822 - GFF4064 0.47 -0.8 58,893 + GFF4064 0.52 -2.2 58,893 + GFF4064 0.52 -0.7 58,893 + GFF4064 0.52 +0.9 58,894 - GFF4064 0.52 -0.3 58,894 - GFF4064 0.52 -0.1 58,894 - GFF4064 0.52 -0.7 59,106 + GFF4064 0.64 -0.2 59,106 + GFF4064 0.64 -1.0 59,106 + GFF4064 0.64 +0.3 59,107 - GFF4064 0.64 -0.3 59,112 + GFF4064 0.64 +0.3 59,112 + GFF4064 0.64 +0.4 59,112 + GFF4064 0.64 +0.4 59,112 + GFF4064 0.64 +0.0 59,113 - GFF4064 0.64 +0.1 59,113 - GFF4064 0.64 +0.1 59,113 - GFF4064 0.64 +0.9 59,113 - GFF4064 0.64 -0.3 59,559 + -1.0 59,559 + +0.4 59,559 + -2.0 59,560 - +0.3 59,960 + GFF4065 0.38 +0.1 59,960 + GFF4065 0.38 +0.6 59,961 - GFF4065 0.38 -1.3 59,961 - GFF4065 0.38 +0.3 59,961 - GFF4065 0.38 -1.3 60,084 + GFF4065 0.58 +0.9 60,084 + GFF4065 0.58 +1.9 60,085 - GFF4065 0.58 +0.1 60,465 + GFF4066 0.13 +0.1 60,465 + GFF4066 0.13 +0.4 60,466 - GFF4066 0.13 -0.7 60,466 - GFF4066 0.13 +1.0
Or see this region's nucleotide sequence