Strain Fitness in Xanthobacter sp. DMC5 around GFF4054

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4053 and GFF4054 are separated by 2 nucleotidesGFF4054 and GFF4055 are separated by 2 nucleotides GFF4053 - Protein YdeP, at 37,213 to 39,510 GFF4053 GFF4054 - Cytochrome bd-II ubiquinol oxidase subunit 1, at 39,513 to 40,931 GFF4054 GFF4055 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 40,934 to 41,962 GFF4055 Position (kb) 39 40 41Strain fitness (log2 ratio) -1 0 1at 38.567 kb on + strand, within GFF4053at 38.683 kb on - strand, within GFF4053at 38.683 kb on - strand, within GFF4053at 38.683 kb on - strand, within GFF4053at 38.683 kb on - strand, within GFF4053at 38.881 kb on - strand, within GFF4053at 38.950 kb on + strand, within GFF4053at 38.951 kb on - strand, within GFF4053at 38.951 kb on - strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.952 kb on + strand, within GFF4053at 38.953 kb on - strand, within GFF4053at 38.953 kb on - strand, within GFF4053at 38.953 kb on - strand, within GFF4053at 39.001 kb on + strand, within GFF4053at 39.175 kb on + strand, within GFF4053at 39.175 kb on + strand, within GFF4053at 39.190 kb on + strand, within GFF4053at 39.257 kb on - strand, within GFF4053at 39.388 kb on + strandat 39.389 kb on - strandat 39.392 kb on - strandat 39.392 kb on - strandat 39.421 kb on + strandat 39.421 kb on + strandat 39.651 kb on + strandat 39.732 kb on + strand, within GFF4054at 39.801 kb on + strand, within GFF4054at 40.002 kb on + strand, within GFF4054at 40.002 kb on + strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.003 kb on - strand, within GFF4054at 40.384 kb on + strand, within GFF4054at 40.384 kb on + strand, within GFF4054at 40.385 kb on - strand, within GFF4054at 40.385 kb on - strand, within GFF4054at 40.385 kb on - strand, within GFF4054at 40.386 kb on + strand, within GFF4054at 40.386 kb on + strand, within GFF4054at 40.557 kb on + strand, within GFF4054at 40.560 kb on - strand, within GFF4054at 40.668 kb on + strand, within GFF4054at 40.669 kb on - strand, within GFF4054at 40.752 kb on + strand, within GFF4054at 40.752 kb on + strand, within GFF4054at 40.753 kb on - strand, within GFF4054at 40.753 kb on - strand, within GFF4054at 40.753 kb on - strand, within GFF4054at 40.753 kb on - strand, within GFF4054at 40.906 kb on - strandat 41.006 kb on + strandat 41.007 kb on - strandat 41.174 kb on + strand, within GFF4055at 41.174 kb on + strand, within GFF4055at 41.175 kb on - strand, within GFF4055at 41.177 kb on + strand, within GFF4055at 41.177 kb on + strand, within GFF4055at 41.177 kb on + strand, within GFF4055at 41.177 kb on + strand, within GFF4055at 41.178 kb on - strand, within GFF4055at 41.178 kb on - strand, within GFF4055at 41.178 kb on - strand, within GFF4055at 41.178 kb on - strand, within GFF4055at 41.178 kb on - strand, within GFF4055at 41.178 kb on - strand, within GFF4055at 41.178 kb on - strand, within GFF4055at 41.198 kb on + strand, within GFF4055at 41.199 kb on - strand, within GFF4055at 41.199 kb on - strand, within GFF4055at 41.199 kb on - strand, within GFF4055at 41.199 kb on - strand, within GFF4055at 41.199 kb on - strand, within GFF4055at 41.199 kb on - strand, within GFF4055at 41.199 kb on - strand, within GFF4055at 41.199 kb on - strand, within GFF4055at 41.457 kb on - strand, within GFF4055at 41.786 kb on + strand, within GFF4055at 41.787 kb on - strand, within GFF4055at 41.892 kb on - strandat 41.906 kb on + strandat 41.907 kb on - strandat 41.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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38,567 + GFF4053 0.59 -0.2
38,683 - GFF4053 0.64 -0.5
38,683 - GFF4053 0.64 -0.3
38,683 - GFF4053 0.64 -0.9
38,683 - GFF4053 0.64 +1.2
38,881 - GFF4053 0.73 -0.1
38,950 + GFF4053 0.76 -0.1
38,951 - GFF4053 0.76 +0.1
38,951 - GFF4053 0.76 -1.7
38,952 + GFF4053 0.76 -0.6
38,952 + GFF4053 0.76 +0.5
38,952 + GFF4053 0.76 +0.0
38,952 + GFF4053 0.76 -0.2
38,952 + GFF4053 0.76 -0.7
38,952 + GFF4053 0.76 +0.1
38,953 - GFF4053 0.76 +0.7
38,953 - GFF4053 0.76 -0.1
38,953 - GFF4053 0.76 -0.4
39,001 + GFF4053 0.78 +0.4
39,175 + GFF4053 0.85 +0.7
39,175 + GFF4053 0.85 -0.2
39,190 + GFF4053 0.86 -0.0
39,257 - GFF4053 0.89 -0.3
39,388 + -0.1
39,389 - -0.1
39,392 - -1.2
39,392 - -1.1
39,421 + +0.2
39,421 + -0.3
39,651 + -0.7
39,732 + GFF4054 0.15 -0.2
39,801 + GFF4054 0.20 +0.4
40,002 + GFF4054 0.34 -0.2
40,002 + GFF4054 0.34 -0.7
40,003 - GFF4054 0.35 +0.4
40,003 - GFF4054 0.35 -0.6
40,003 - GFF4054 0.35 +1.0
40,003 - GFF4054 0.35 +0.4
40,003 - GFF4054 0.35 +0.1
40,003 - GFF4054 0.35 -0.2
40,003 - GFF4054 0.35 +1.4
40,384 + GFF4054 0.61 -1.6
40,384 + GFF4054 0.61 -0.5
40,385 - GFF4054 0.61 +1.2
40,385 - GFF4054 0.61 +0.1
40,385 - GFF4054 0.61 -0.5
40,386 + GFF4054 0.62 -0.5
40,386 + GFF4054 0.62 +1.3
40,557 + GFF4054 0.74 -0.4
40,560 - GFF4054 0.74 -0.3
40,668 + GFF4054 0.81 +0.2
40,669 - GFF4054 0.81 +0.1
40,752 + GFF4054 0.87 +0.1
40,752 + GFF4054 0.87 -0.3
40,753 - GFF4054 0.87 -0.2
40,753 - GFF4054 0.87 +0.2
40,753 - GFF4054 0.87 -0.8
40,753 - GFF4054 0.87 -0.1
40,906 - +0.1
41,006 + +0.4
41,007 - +0.7
41,174 + GFF4055 0.23 -0.2
41,174 + GFF4055 0.23 +1.7
41,175 - GFF4055 0.23 -0.1
41,177 + GFF4055 0.24 -1.3
41,177 + GFF4055 0.24 -1.2
41,177 + GFF4055 0.24 +0.3
41,177 + GFF4055 0.24 +1.7
41,178 - GFF4055 0.24 -0.2
41,178 - GFF4055 0.24 +1.1
41,178 - GFF4055 0.24 -0.7
41,178 - GFF4055 0.24 -0.0
41,178 - GFF4055 0.24 +0.3
41,178 - GFF4055 0.24 -1.2
41,178 - GFF4055 0.24 +0.3
41,198 + GFF4055 0.26 +0.1
41,199 - GFF4055 0.26 -0.8
41,199 - GFF4055 0.26 -0.3
41,199 - GFF4055 0.26 -1.6
41,199 - GFF4055 0.26 -0.1
41,199 - GFF4055 0.26 +0.9
41,199 - GFF4055 0.26 -0.3
41,199 - GFF4055 0.26 +0.8
41,199 - GFF4055 0.26 +0.4
41,457 - GFF4055 0.51 +0.4
41,786 + GFF4055 0.83 +0.6
41,787 - GFF4055 0.83 -0.4
41,892 - -0.7
41,906 + +0.7
41,907 - -0.2
41,907 - -0.0

Or see this region's nucleotide sequence