Strain Fitness in Xanthobacter sp. DMC5 around GFF4047

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4045 and GFF4046 overlap by 4 nucleotidesGFF4046 and GFF4047 overlap by 4 nucleotidesGFF4047 and GFF4048 are separated by 54 nucleotidesGFF4048 and GFF4049 are separated by 22 nucleotides GFF4045 - Nicotinate dehydrogenase subunit B, at 27,619 to 28,962 GFF4045 GFF4046 - Nicotinate dehydrogenase subunit A, at 28,959 to 29,453 GFF4046 GFF4047 - Nicotinate dehydrogenase subunit B, at 29,450 to 31,705 GFF4047 GFF4048 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 31,760 to 32,536 GFF4048 GFF4049 - 2,6-dihydroxypyridine 3-monooxygenase, at 32,559 to 33,674 GFF4049 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -1 0 1at 28.483 kb on + strand, within GFF4045at 28.484 kb on - strand, within GFF4045at 28.843 kb on + strandat 28.844 kb on - strandat 29.025 kb on + strand, within GFF4046at 29.025 kb on + strand, within GFF4046at 29.025 kb on + strand, within GFF4046at 29.026 kb on - strand, within GFF4046at 29.026 kb on - strand, within GFF4046at 29.254 kb on - strand, within GFF4046at 29.466 kb on + strandat 29.466 kb on + strandat 29.466 kb on + strandat 29.467 kb on - strandat 29.795 kb on + strand, within GFF4047at 29.796 kb on - strand, within GFF4047at 29.796 kb on - strand, within GFF4047at 29.796 kb on - strand, within GFF4047at 30.013 kb on + strand, within GFF4047at 30.107 kb on + strand, within GFF4047at 30.107 kb on + strand, within GFF4047at 30.107 kb on + strand, within GFF4047at 30.107 kb on + strand, within GFF4047at 30.107 kb on + strand, within GFF4047at 30.107 kb on + strand, within GFF4047at 30.107 kb on + strand, within GFF4047at 30.108 kb on - strand, within GFF4047at 30.108 kb on - strand, within GFF4047at 30.108 kb on - strand, within GFF4047at 30.108 kb on - strand, within GFF4047at 30.108 kb on - strand, within GFF4047at 30.108 kb on - strand, within GFF4047at 30.461 kb on + strand, within GFF4047at 30.462 kb on - strand, within GFF4047at 30.503 kb on + strand, within GFF4047at 30.551 kb on + strand, within GFF4047at 30.552 kb on - strand, within GFF4047at 30.552 kb on - strand, within GFF4047at 30.635 kb on + strand, within GFF4047at 30.635 kb on + strand, within GFF4047at 30.971 kb on + strand, within GFF4047at 30.972 kb on - strand, within GFF4047at 31.233 kb on - strand, within GFF4047at 31.253 kb on + strand, within GFF4047at 31.271 kb on + strand, within GFF4047at 31.272 kb on - strand, within GFF4047at 31.272 kb on - strand, within GFF4047at 31.272 kb on - strand, within GFF4047at 31.485 kb on - strandat 31.997 kb on - strand, within GFF4048at 32.114 kb on + strand, within GFF4048at 32.180 kb on + strand, within GFF4048at 32.205 kb on - strand, within GFF4048at 32.456 kb on + strand, within GFF4048at 32.456 kb on + strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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28,483 + GFF4045 0.64 +0.8
28,484 - GFF4045 0.64 -0.5
28,843 + -1.3
28,844 - +0.8
29,025 + GFF4046 0.13 +0.2
29,025 + GFF4046 0.13 -0.8
29,025 + GFF4046 0.13 -0.8
29,026 - GFF4046 0.14 +0.1
29,026 - GFF4046 0.14 +0.5
29,254 - GFF4046 0.60 +0.4
29,466 + +0.8
29,466 + +0.9
29,466 + +0.0
29,467 - +0.1
29,795 + GFF4047 0.15 +0.8
29,796 - GFF4047 0.15 -0.3
29,796 - GFF4047 0.15 +0.0
29,796 - GFF4047 0.15 -0.2
30,013 + GFF4047 0.25 -0.5
30,107 + GFF4047 0.29 -0.1
30,107 + GFF4047 0.29 -0.5
30,107 + GFF4047 0.29 +0.4
30,107 + GFF4047 0.29 +1.0
30,107 + GFF4047 0.29 -0.5
30,107 + GFF4047 0.29 -0.2
30,107 + GFF4047 0.29 -0.5
30,108 - GFF4047 0.29 -0.5
30,108 - GFF4047 0.29 -0.5
30,108 - GFF4047 0.29 -0.3
30,108 - GFF4047 0.29 -0.7
30,108 - GFF4047 0.29 +0.0
30,108 - GFF4047 0.29 +0.2
30,461 + GFF4047 0.45 -1.6
30,462 - GFF4047 0.45 -0.7
30,503 + GFF4047 0.47 +0.0
30,551 + GFF4047 0.49 -0.9
30,552 - GFF4047 0.49 -1.1
30,552 - GFF4047 0.49 -0.3
30,635 + GFF4047 0.53 -0.0
30,635 + GFF4047 0.53 +1.1
30,971 + GFF4047 0.67 -0.2
30,972 - GFF4047 0.67 +0.3
31,233 - GFF4047 0.79 +0.6
31,253 + GFF4047 0.80 +0.2
31,271 + GFF4047 0.81 +0.7
31,272 - GFF4047 0.81 -1.6
31,272 - GFF4047 0.81 +0.4
31,272 - GFF4047 0.81 -0.9
31,485 - -0.5
31,997 - GFF4048 0.31 -0.5
32,114 + GFF4048 0.46 -0.4
32,180 + GFF4048 0.54 -0.3
32,205 - GFF4048 0.57 +0.2
32,456 + GFF4048 0.90 -0.2
32,456 + GFF4048 0.90 -0.3
32,457 - GFF4048 0.90 -0.3
32,457 - GFF4048 0.90 -0.4
32,457 - GFF4048 0.90 -0.3
32,457 - GFF4048 0.90 -0.7
32,457 - GFF4048 0.90 +1.2
32,534 + -0.1

Or see this region's nucleotide sequence