Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4027 and GFF4028 are separated by 193 nucleotides GFF4028 and GFF4029 overlap by 4 nucleotides GFF4029 and GFF4030 overlap by 4 nucleotides
GFF4027 - hypothetical protein, at 10,767 to 11,462
GFF4027
GFF4028 - 2,6-dihydroxypyridine 3-monooxygenase, at 11,656 to 12,933
GFF4028
GFF4029 - Inner membrane protein YjcH, at 12,930 to 13,286
GFF4029
GFF4030 - Cation/acetate symporter ActP, at 13,283 to 14,947
GFF4030
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1
2 at 10.741 kb on - strand at 10.938 kb on + strand, within GFF4027 at 10.939 kb on - strand, within GFF4027 at 11.073 kb on + strand, within GFF4027 at 11.103 kb on + strand, within GFF4027 at 11.322 kb on + strand, within GFF4027 at 11.613 kb on + strand at 11.613 kb on + strand at 11.614 kb on - strand at 12.010 kb on + strand, within GFF4028 at 12.011 kb on - strand, within GFF4028 at 12.205 kb on + strand, within GFF4028 at 12.205 kb on + strand, within GFF4028 at 12.214 kb on + strand, within GFF4028 at 12.214 kb on + strand, within GFF4028 at 12.214 kb on + strand, within GFF4028 at 12.214 kb on + strand, within GFF4028 at 12.215 kb on - strand, within GFF4028 at 12.215 kb on - strand, within GFF4028 at 12.215 kb on - strand, within GFF4028 at 12.373 kb on + strand, within GFF4028 at 12.558 kb on + strand, within GFF4028 at 12.558 kb on + strand, within GFF4028 at 12.558 kb on + strand, within GFF4028 at 12.559 kb on - strand, within GFF4028 at 12.823 kb on + strand at 12.824 kb on - strand at 12.824 kb on - strand at 12.824 kb on - strand at 12.824 kb on - strand at 12.824 kb on - strand at 12.824 kb on - strand at 13.086 kb on + strand, within GFF4029 at 13.086 kb on + strand, within GFF4029 at 13.087 kb on - strand, within GFF4029 at 13.095 kb on + strand, within GFF4029 at 13.096 kb on - strand, within GFF4029 at 13.096 kb on - strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.222 kb on - strand, within GFF4029 at 13.222 kb on - strand, within GFF4029 at 13.222 kb on - strand, within GFF4029 at 13.285 kb on + strand at 13.415 kb on + strand at 13.496 kb on + strand, within GFF4030 at 13.497 kb on - strand, within GFF4030 at 13.497 kb on - strand, within GFF4030 at 13.557 kb on - strand, within GFF4030 at 13.557 kb on - strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.599 kb on - strand, within GFF4030 at 13.599 kb on - strand, within GFF4030 at 13.611 kb on - strand, within GFF4030 at 13.625 kb on + strand, within GFF4030 at 13.626 kb on - strand, within GFF4030 at 13.626 kb on - strand, within GFF4030 at 13.725 kb on - strand, within GFF4030 at 13.790 kb on + strand, within GFF4030 at 13.790 kb on + strand, within GFF4030 at 13.791 kb on - strand, within GFF4030 at 13.791 kb on - strand, within GFF4030 at 13.791 kb on - strand, within GFF4030 at 13.791 kb on - strand, within GFF4030 at 13.850 kb on + strand, within GFF4030 at 13.851 kb on - strand, within GFF4030 at 13.851 kb on - strand, within GFF4030 at 13.851 kb on - strand, within GFF4030 at 13.851 kb on - strand, within GFF4030 at 13.892 kb on + strand, within GFF4030 at 13.892 kb on + strand, within GFF4030 at 13.893 kb on - strand, within GFF4030
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 10,741 - -0.7 10,938 + GFF4027 0.25 +1.2 10,939 - GFF4027 0.25 +1.4 11,073 + GFF4027 0.44 -0.9 11,103 + GFF4027 0.48 -1.9 11,322 + GFF4027 0.80 +0.3 11,613 + +0.0 11,613 + +0.8 11,614 - +2.4 12,010 + GFF4028 0.28 +0.1 12,011 - GFF4028 0.28 -1.4 12,205 + GFF4028 0.43 +0.1 12,205 + GFF4028 0.43 +0.1 12,214 + GFF4028 0.44 -0.2 12,214 + GFF4028 0.44 -0.5 12,214 + GFF4028 0.44 +0.1 12,214 + GFF4028 0.44 -1.3 12,215 - GFF4028 0.44 +0.5 12,215 - GFF4028 0.44 +0.8 12,215 - GFF4028 0.44 -0.7 12,373 + GFF4028 0.56 +0.6 12,558 + GFF4028 0.71 +0.4 12,558 + GFF4028 0.71 -0.2 12,558 + GFF4028 0.71 -0.5 12,559 - GFF4028 0.71 -0.1 12,823 + -0.3 12,824 - -0.3 12,824 - -0.3 12,824 - -0.0 12,824 - -0.2 12,824 - -0.9 12,824 - -0.1 13,086 + GFF4029 0.44 +0.5 13,086 + GFF4029 0.44 +0.5 13,087 - GFF4029 0.44 +0.5 13,095 + GFF4029 0.46 +0.4 13,096 - GFF4029 0.46 +0.6 13,096 - GFF4029 0.46 -0.2 13,221 + GFF4029 0.82 -0.3 13,221 + GFF4029 0.82 +0.8 13,221 + GFF4029 0.82 -1.4 13,221 + GFF4029 0.82 +1.2 13,221 + GFF4029 0.82 -0.3 13,221 + GFF4029 0.82 -0.1 13,221 + GFF4029 0.82 -0.6 13,221 + GFF4029 0.82 -1.9 13,221 + GFF4029 0.82 +0.8 13,222 - GFF4029 0.82 +0.1 13,222 - GFF4029 0.82 +0.2 13,222 - GFF4029 0.82 -0.2 13,285 + -1.0 13,415 + +0.6 13,496 + GFF4030 0.13 +1.7 13,497 - GFF4030 0.13 -0.4 13,497 - GFF4030 0.13 +0.7 13,557 - GFF4030 0.16 +0.8 13,557 - GFF4030 0.16 -0.5 13,598 + GFF4030 0.19 +0.4 13,598 + GFF4030 0.19 -0.5 13,598 + GFF4030 0.19 +0.2 13,598 + GFF4030 0.19 -0.4 13,598 + GFF4030 0.19 -0.0 13,598 + GFF4030 0.19 +0.6 13,599 - GFF4030 0.19 +0.9 13,599 - GFF4030 0.19 +0.1 13,611 - GFF4030 0.20 +0.1 13,625 + GFF4030 0.21 -1.2 13,626 - GFF4030 0.21 +0.4 13,626 - GFF4030 0.21 +0.9 13,725 - GFF4030 0.27 -0.2 13,790 + GFF4030 0.30 -0.6 13,790 + GFF4030 0.30 -1.0 13,791 - GFF4030 0.31 -0.5 13,791 - GFF4030 0.31 -0.2 13,791 - GFF4030 0.31 -0.3 13,791 - GFF4030 0.31 +0.2 13,850 + GFF4030 0.34 -0.7 13,851 - GFF4030 0.34 -0.3 13,851 - GFF4030 0.34 +0.2 13,851 - GFF4030 0.34 +0.8 13,851 - GFF4030 0.34 -0.2 13,892 + GFF4030 0.37 +0.6 13,892 + GFF4030 0.37 +0.8 13,893 - GFF4030 0.37 -1.3
Or see this region's nucleotide sequence