Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4017 and GFF4018 are separated by 186 nucleotides
GFF4017 - Putative fluoride ion transporter CrcB, at 555 to 1,043
GFF4017
GFF4018 - Oxalate decarboxylase OxdC, at 1,230 to 2,423
GFF4018
Position (kb) 0
1
2 Strain fitness (log2 ratio) -1
0
1 at 0.064 kb on + strand at 0.064 kb on + strand at 0.071 kb on + strand at 0.071 kb on + strand at 0.189 kb on + strand at 0.292 kb on + strand at 0.342 kb on + strand at 0.342 kb on + strand at 0.342 kb on + strand at 0.343 kb on - strand at 0.343 kb on - strand at 0.373 kb on - strand at 0.373 kb on - strand at 0.419 kb on - strand at 0.434 kb on + strand at 0.434 kb on + strand at 0.435 kb on - strand at 0.443 kb on + strand at 0.443 kb on + strand at 0.444 kb on - strand at 0.551 kb on + strand at 0.551 kb on + strand at 0.552 kb on - strand at 0.552 kb on - strand at 0.552 kb on - strand at 0.552 kb on - strand at 0.648 kb on + strand, within GFF4017 at 0.648 kb on + strand, within GFF4017 at 0.649 kb on - strand, within GFF4017 at 0.650 kb on + strand, within GFF4017 at 0.651 kb on - strand, within GFF4017 at 0.654 kb on + strand, within GFF4017 at 0.654 kb on + strand, within GFF4017 at 0.654 kb on + strand, within GFF4017 at 0.654 kb on + strand, within GFF4017 at 0.655 kb on - strand, within GFF4017 at 0.655 kb on - strand, within GFF4017 at 0.655 kb on - strand, within GFF4017 at 0.988 kb on + strand, within GFF4017 at 1.073 kb on + strand at 1.073 kb on + strand at 1.073 kb on + strand at 1.073 kb on + strand at 1.073 kb on + strand at 1.074 kb on - strand at 1.118 kb on + strand at 1.118 kb on + strand at 1.118 kb on + strand at 1.149 kb on + strand at 1.182 kb on - strand at 1.182 kb on - strand at 1.217 kb on + strand at 1.217 kb on + strand at 1.218 kb on - strand at 1.218 kb on - strand at 1.218 kb on - strand at 1.226 kb on - strand at 1.263 kb on + strand at 1.263 kb on + strand at 1.263 kb on + strand at 1.263 kb on + strand at 1.264 kb on - strand at 1.264 kb on - strand at 1.411 kb on - strand, within GFF4018 at 1.497 kb on - strand, within GFF4018 at 1.788 kb on - strand, within GFF4018 at 1.788 kb on - strand, within GFF4018 at 1.788 kb on - strand, within GFF4018 at 1.788 kb on - strand, within GFF4018 at 1.801 kb on + strand, within GFF4018 at 1.801 kb on + strand, within GFF4018 at 1.801 kb on + strand, within GFF4018 at 1.802 kb on - strand, within GFF4018 at 1.802 kb on - strand, within GFF4018 at 1.802 kb on - strand, within GFF4018 at 1.866 kb on + strand, within GFF4018 at 1.866 kb on + strand, within GFF4018 at 1.866 kb on + strand, within GFF4018 at 1.867 kb on - strand, within GFF4018 at 1.867 kb on - strand, within GFF4018 at 1.953 kb on + strand, within GFF4018 at 1.954 kb on - strand, within GFF4018 at 1.954 kb on - strand, within GFF4018 at 1.954 kb on - strand, within GFF4018
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 64 + -0.9 64 + +0.3 71 + +1.7 71 + -0.1 189 + -1.1 292 + +0.4 342 + -1.7 342 + +0.7 342 + -0.4 343 - -0.3 343 - +0.3 373 - +1.1 373 - -0.3 419 - -0.2 434 + +0.3 434 + -0.1 435 - +0.5 443 + +0.8 443 + -1.3 444 - -0.7 551 + -0.5 551 + -0.8 552 - -0.3 552 - +0.6 552 - +0.8 552 - -0.7 648 + GFF4017 0.19 +0.0 648 + GFF4017 0.19 +0.5 649 - GFF4017 0.19 -0.1 650 + GFF4017 0.19 +0.3 651 - GFF4017 0.20 +0.1 654 + GFF4017 0.20 +0.3 654 + GFF4017 0.20 +0.9 654 + GFF4017 0.20 +0.4 654 + GFF4017 0.20 -0.4 655 - GFF4017 0.20 +0.7 655 - GFF4017 0.20 +0.5 655 - GFF4017 0.20 -0.2 988 + GFF4017 0.89 -1.4 1,073 + -0.0 1,073 + -1.1 1,073 + -0.0 1,073 + +0.1 1,073 + +0.5 1,074 - +0.3 1,118 + -0.5 1,118 + +0.4 1,118 + -0.2 1,149 + +0.4 1,182 - -0.2 1,182 - +0.1 1,217 + +0.6 1,217 + -0.8 1,218 - +0.5 1,218 - -0.8 1,218 - +0.2 1,226 - +0.6 1,263 + +0.9 1,263 + -0.8 1,263 + +0.0 1,263 + -0.5 1,264 - -0.1 1,264 - +0.3 1,411 - GFF4018 0.15 -0.3 1,497 - GFF4018 0.22 -0.4 1,788 - GFF4018 0.47 -0.9 1,788 - GFF4018 0.47 -0.6 1,788 - GFF4018 0.47 -1.1 1,788 - GFF4018 0.47 +0.5 1,801 + GFF4018 0.48 -0.5 1,801 + GFF4018 0.48 +1.0 1,801 + GFF4018 0.48 -0.0 1,802 - GFF4018 0.48 +0.1 1,802 - GFF4018 0.48 +0.7 1,802 - GFF4018 0.48 -0.9 1,866 + GFF4018 0.53 -0.5 1,866 + GFF4018 0.53 -0.3 1,866 + GFF4018 0.53 +0.3 1,867 - GFF4018 0.53 +0.5 1,867 - GFF4018 0.53 +0.2 1,953 + GFF4018 0.61 +0.2 1,954 - GFF4018 0.61 +0.3 1,954 - GFF4018 0.61 +0.1 1,954 - GFF4018 0.61 +0.7
Or see this region's nucleotide sequence