Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4011 and GFF4012 are separated by 9 nucleotides GFF4012 and GFF4013 are separated by 181 nucleotides
GFF4011 - putative protein, at 386,090 to 387,115
GFF4011
GFF4012 - HTH-type transcriptional regulator GntR, at 387,125 to 388,186
GFF4012
GFF4013 - hypothetical protein, at 388,368 to 388,994
GFF4013
Position (kb) 387
388
389 Strain fitness (log2 ratio) -1
0
1 at 386.151 kb on + strand at 386.151 kb on + strand at 386.152 kb on - strand at 386.152 kb on - strand at 386.175 kb on + strand at 386.244 kb on + strand, within GFF4011 at 386.245 kb on - strand, within GFF4011 at 386.245 kb on - strand, within GFF4011 at 386.245 kb on - strand, within GFF4011 at 386.286 kb on + strand, within GFF4011 at 386.287 kb on - strand, within GFF4011 at 386.287 kb on - strand, within GFF4011 at 386.287 kb on - strand, within GFF4011 at 386.346 kb on + strand, within GFF4011 at 386.346 kb on + strand, within GFF4011 at 386.346 kb on + strand, within GFF4011 at 386.346 kb on + strand, within GFF4011 at 386.347 kb on - strand, within GFF4011 at 386.347 kb on - strand, within GFF4011 at 386.404 kb on + strand, within GFF4011 at 386.405 kb on - strand, within GFF4011 at 386.475 kb on + strand, within GFF4011 at 386.476 kb on - strand, within GFF4011 at 386.526 kb on + strand, within GFF4011 at 386.596 kb on - strand, within GFF4011 at 386.643 kb on + strand, within GFF4011 at 386.644 kb on - strand, within GFF4011 at 386.856 kb on + strand, within GFF4011 at 386.856 kb on + strand, within GFF4011 at 386.856 kb on + strand, within GFF4011 at 386.857 kb on - strand, within GFF4011 at 387.151 kb on + strand at 387.522 kb on + strand, within GFF4012 at 387.522 kb on + strand, within GFF4012 at 387.588 kb on + strand, within GFF4012 at 387.588 kb on + strand, within GFF4012 at 387.634 kb on - strand, within GFF4012 at 387.882 kb on + strand, within GFF4012 at 388.236 kb on + strand at 388.237 kb on - strand at 389.065 kb on - strand at 389.065 kb on - strand at 389.070 kb on + strand at 389.070 kb on + strand at 389.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 386,151 + +0.2 386,151 + +0.3 386,152 - +0.0 386,152 - +1.2 386,175 + +0.3 386,244 + GFF4011 0.15 +0.2 386,245 - GFF4011 0.15 +0.7 386,245 - GFF4011 0.15 -0.7 386,245 - GFF4011 0.15 -1.7 386,286 + GFF4011 0.19 +0.8 386,287 - GFF4011 0.19 -0.3 386,287 - GFF4011 0.19 -0.1 386,287 - GFF4011 0.19 -0.6 386,346 + GFF4011 0.25 -0.0 386,346 + GFF4011 0.25 +0.2 386,346 + GFF4011 0.25 -1.1 386,346 + GFF4011 0.25 +1.0 386,347 - GFF4011 0.25 +0.1 386,347 - GFF4011 0.25 +0.5 386,404 + GFF4011 0.31 -0.0 386,405 - GFF4011 0.31 -0.7 386,475 + GFF4011 0.38 -0.6 386,476 - GFF4011 0.38 +1.1 386,526 + GFF4011 0.42 +0.4 386,596 - GFF4011 0.49 -0.4 386,643 + GFF4011 0.54 -0.4 386,644 - GFF4011 0.54 -0.8 386,856 + GFF4011 0.75 -0.9 386,856 + GFF4011 0.75 -1.6 386,856 + GFF4011 0.75 -0.4 386,857 - GFF4011 0.75 -0.0 387,151 + -0.9 387,522 + GFF4012 0.37 -0.9 387,522 + GFF4012 0.37 +0.0 387,588 + GFF4012 0.44 +1.6 387,588 + GFF4012 0.44 -0.1 387,634 - GFF4012 0.48 -0.4 387,882 + GFF4012 0.71 -0.1 388,236 + -0.3 388,237 - -0.1 389,065 - +0.2 389,065 - +0.5 389,070 + +0.0 389,070 + -1.0 389,168 + -0.5
Or see this region's nucleotide sequence