Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4003 and GFF4004 are separated by 83 nucleotides GFF4004 and GFF4005 are separated by 271 nucleotides GFF4005 and GFF4006 are separated by 828 nucleotides
GFF4003 - hypothetical protein, at 378,011 to 378,373
GFF4003
GFF4004 - hypothetical protein, at 378,457 to 379,011
GFF4004
GFF4005 - Lysine/ornithine decarboxylase, at 379,283 to 380,413
GFF4005
GFF4006 - 5-aminolevulinate synthase, at 381,242 to 382,525
GFF4006
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1
2 at 378.600 kb on - strand, within GFF4004 at 378.600 kb on - strand, within GFF4004 at 378.600 kb on - strand, within GFF4004 at 378.656 kb on + strand, within GFF4004 at 378.656 kb on + strand, within GFF4004 at 378.656 kb on + strand, within GFF4004 at 379.077 kb on + strand at 379.078 kb on - strand at 379.078 kb on - strand at 379.197 kb on - strand at 379.293 kb on + strand at 379.294 kb on - strand at 379.294 kb on - strand at 379.336 kb on - strand at 379.347 kb on + strand at 379.348 kb on - strand at 379.422 kb on + strand, within GFF4005 at 379.422 kb on + strand, within GFF4005 at 379.422 kb on + strand, within GFF4005 at 379.422 kb on + strand, within GFF4005 at 379.423 kb on - strand, within GFF4005 at 379.423 kb on - strand, within GFF4005 at 379.563 kb on + strand, within GFF4005 at 379.563 kb on + strand, within GFF4005 at 379.564 kb on - strand, within GFF4005 at 379.726 kb on - strand, within GFF4005 at 380.073 kb on + strand, within GFF4005 at 380.284 kb on - strand, within GFF4005 at 380.284 kb on - strand, within GFF4005 at 380.325 kb on + strand at 380.325 kb on + strand at 380.326 kb on - strand at 380.326 kb on - strand at 380.326 kb on - strand at 380.418 kb on - strand at 380.552 kb on + strand at 380.573 kb on - strand at 380.697 kb on + strand at 380.698 kb on - strand at 380.708 kb on + strand at 380.711 kb on + strand at 380.711 kb on + strand at 380.755 kb on - strand at 380.862 kb on + strand at 381.060 kb on - strand at 381.060 kb on - strand at 381.164 kb on - strand at 381.185 kb on + strand at 381.185 kb on + strand at 381.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 378,600 - GFF4004 0.26 +0.4 378,600 - GFF4004 0.26 +0.2 378,600 - GFF4004 0.26 +0.3 378,656 + GFF4004 0.36 -0.9 378,656 + GFF4004 0.36 -0.1 378,656 + GFF4004 0.36 -0.2 379,077 + -0.0 379,078 - -0.7 379,078 - +0.2 379,197 - -0.1 379,293 + +1.3 379,294 - +1.4 379,294 - +1.1 379,336 - +1.1 379,347 + +1.6 379,348 - +1.2 379,422 + GFF4005 0.12 +1.8 379,422 + GFF4005 0.12 +1.9 379,422 + GFF4005 0.12 +1.4 379,422 + GFF4005 0.12 +1.5 379,423 - GFF4005 0.12 -0.1 379,423 - GFF4005 0.12 +0.5 379,563 + GFF4005 0.25 +0.7 379,563 + GFF4005 0.25 +1.1 379,564 - GFF4005 0.25 +1.1 379,726 - GFF4005 0.39 +1.7 380,073 + GFF4005 0.70 +1.1 380,284 - GFF4005 0.89 +1.3 380,284 - GFF4005 0.89 +1.0 380,325 + +0.6 380,325 + +1.8 380,326 - +1.6 380,326 - +1.6 380,326 - +2.3 380,418 - +0.4 380,552 + +1.6 380,573 - -1.8 380,697 + +1.3 380,698 - -1.2 380,708 + +2.1 380,711 + +0.2 380,711 + +1.2 380,755 - -1.7 380,862 + +1.3 381,060 - +0.1 381,060 - +1.2 381,164 - -0.5 381,185 + +0.1 381,185 + +0.2 381,193 + +0.9
Or see this region's nucleotide sequence