Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF398 and GFF399 are separated by 397 nucleotides GFF399 and GFF400 are separated by 118 nucleotides
GFF398 - hypothetical protein, at 409,914 to 411,389
GFF398
GFF399 - hypothetical protein, at 411,787 to 413,106
GFF399
GFF400 - Peptidoglycan-associated lipoprotein, at 413,225 to 415,441
GFF400
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -1
0
1
2 at 411.438 kb on + strand at 411.500 kb on - strand at 411.606 kb on + strand at 411.669 kb on - strand at 411.669 kb on - strand at 411.669 kb on - strand at 411.672 kb on + strand at 411.706 kb on - strand at 411.809 kb on + strand at 411.810 kb on - strand at 411.810 kb on - strand at 412.003 kb on + strand, within GFF399 at 412.021 kb on + strand, within GFF399 at 412.024 kb on + strand, within GFF399 at 412.033 kb on + strand, within GFF399 at 412.033 kb on + strand, within GFF399 at 412.066 kb on + strand, within GFF399 at 412.136 kb on - strand, within GFF399 at 412.191 kb on - strand, within GFF399 at 412.191 kb on - strand, within GFF399 at 412.237 kb on + strand, within GFF399 at 412.237 kb on + strand, within GFF399 at 412.237 kb on + strand, within GFF399 at 412.363 kb on + strand, within GFF399 at 412.435 kb on - strand, within GFF399 at 412.468 kb on + strand, within GFF399 at 412.519 kb on + strand, within GFF399 at 412.519 kb on + strand, within GFF399 at 412.520 kb on - strand, within GFF399 at 412.621 kb on + strand, within GFF399 at 412.621 kb on + strand, within GFF399 at 412.621 kb on + strand, within GFF399 at 412.674 kb on + strand, within GFF399 at 412.675 kb on - strand, within GFF399 at 412.675 kb on - strand, within GFF399 at 412.696 kb on + strand, within GFF399 at 412.696 kb on + strand, within GFF399 at 412.698 kb on + strand, within GFF399 at 412.698 kb on + strand, within GFF399 at 412.699 kb on - strand, within GFF399 at 412.718 kb on - strand, within GFF399 at 412.747 kb on + strand, within GFF399 at 412.870 kb on + strand, within GFF399 at 412.880 kb on - strand, within GFF399 at 412.886 kb on + strand, within GFF399 at 412.890 kb on + strand, within GFF399 at 412.890 kb on + strand, within GFF399 at 412.912 kb on + strand, within GFF399 at 412.912 kb on + strand, within GFF399 at 412.913 kb on - strand, within GFF399 at 412.937 kb on - strand, within GFF399 at 412.952 kb on - strand, within GFF399 at 412.997 kb on - strand at 413.009 kb on - strand at 413.026 kb on + strand at 413.027 kb on - strand at 413.027 kb on - strand at 413.135 kb on + strand at 413.135 kb on + strand at 413.135 kb on + strand at 413.136 kb on - strand at 413.178 kb on + strand at 413.178 kb on + strand at 413.179 kb on - strand at 413.179 kb on - strand at 413.228 kb on + strand at 413.229 kb on - strand at 413.648 kb on + strand, within GFF400 at 413.648 kb on + strand, within GFF400 at 413.877 kb on - strand, within GFF400 at 414.015 kb on - strand, within GFF400 at 414.015 kb on - strand, within GFF400
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 411,438 + -0.0 411,500 - -0.0 411,606 + +0.7 411,669 - -0.3 411,669 - +0.7 411,669 - -1.4 411,672 + +0.6 411,706 - -0.5 411,809 + +0.2 411,810 - +0.4 411,810 - +0.4 412,003 + GFF399 0.16 +1.1 412,021 + GFF399 0.18 -0.6 412,024 + GFF399 0.18 +1.3 412,033 + GFF399 0.19 -0.2 412,033 + GFF399 0.19 -0.3 412,066 + GFF399 0.21 -0.8 412,136 - GFF399 0.26 +0.3 412,191 - GFF399 0.31 -0.0 412,191 - GFF399 0.31 +0.6 412,237 + GFF399 0.34 -1.1 412,237 + GFF399 0.34 +1.8 412,237 + GFF399 0.34 +0.2 412,363 + GFF399 0.44 +0.4 412,435 - GFF399 0.49 +0.1 412,468 + GFF399 0.52 -1.1 412,519 + GFF399 0.55 -1.1 412,519 + GFF399 0.55 -0.1 412,520 - GFF399 0.56 -1.1 412,621 + GFF399 0.63 -0.3 412,621 + GFF399 0.63 +0.3 412,621 + GFF399 0.63 +0.3 412,674 + GFF399 0.67 +0.1 412,675 - GFF399 0.67 -0.5 412,675 - GFF399 0.67 +1.0 412,696 + GFF399 0.69 +0.3 412,696 + GFF399 0.69 +1.0 412,698 + GFF399 0.69 +0.3 412,698 + GFF399 0.69 -0.5 412,699 - GFF399 0.69 +0.0 412,718 - GFF399 0.71 -0.2 412,747 + GFF399 0.73 +0.1 412,870 + GFF399 0.82 -0.1 412,880 - GFF399 0.83 -0.3 412,886 + GFF399 0.83 -0.0 412,890 + GFF399 0.84 +0.1 412,890 + GFF399 0.84 +0.3 412,912 + GFF399 0.85 +0.0 412,912 + GFF399 0.85 +0.5 412,913 - GFF399 0.85 -0.5 412,937 - GFF399 0.87 -0.1 412,952 - GFF399 0.88 -0.1 412,997 - -0.1 413,009 - -0.1 413,026 + +0.7 413,027 - -0.6 413,027 - +0.2 413,135 + +0.3 413,135 + -0.6 413,135 + +0.1 413,136 - -0.6 413,178 + +0.0 413,178 + -0.3 413,179 - +0.8 413,179 - -0.9 413,228 + -0.4 413,229 - -0.8 413,648 + GFF400 0.19 -0.4 413,648 + GFF400 0.19 +0.2 413,877 - GFF400 0.29 +0.3 414,015 - GFF400 0.36 -0.2 414,015 - GFF400 0.36 +0.0
Or see this region's nucleotide sequence