Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3987 and GFF3988 are separated by 52 nucleotides GFF3988 and GFF3989 are separated by 166 nucleotides GFF3989 and GFF3990 overlap by 4 nucleotides
GFF3987 - Lipoprotein signal peptidase, at 358,752 to 359,282
GFF3987
GFF3988 - hypothetical protein, at 359,335 to 360,060
GFF3988
GFF3989 - putative zinc protease, at 360,227 to 361,597
GFF3989
GFF3990 - hypothetical protein, at 361,594 to 363,006
GFF3990
Position (kb) 360
361
362 Strain fitness (log2 ratio) -1
0
1
2 at 359.287 kb on + strand at 360.151 kb on + strand at 360.151 kb on + strand at 360.151 kb on + strand at 360.380 kb on + strand, within GFF3989 at 360.540 kb on - strand, within GFF3989 at 360.548 kb on + strand, within GFF3989 at 360.734 kb on + strand, within GFF3989 at 360.734 kb on + strand, within GFF3989 at 360.735 kb on - strand, within GFF3989 at 360.735 kb on - strand, within GFF3989 at 360.818 kb on + strand, within GFF3989 at 360.818 kb on + strand, within GFF3989 at 360.819 kb on - strand, within GFF3989 at 360.819 kb on - strand, within GFF3989 at 360.830 kb on + strand, within GFF3989 at 360.830 kb on + strand, within GFF3989 at 360.831 kb on - strand, within GFF3989 at 360.908 kb on + strand, within GFF3989 at 360.908 kb on + strand, within GFF3989 at 360.908 kb on + strand, within GFF3989 at 361.127 kb on + strand, within GFF3989 at 361.127 kb on + strand, within GFF3989 at 361.127 kb on + strand, within GFF3989 at 361.128 kb on - strand, within GFF3989 at 361.128 kb on - strand, within GFF3989 at 361.217 kb on + strand, within GFF3989 at 361.356 kb on - strand, within GFF3989 at 361.392 kb on - strand, within GFF3989 at 362.337 kb on - strand, within GFF3990 at 362.534 kb on - strand, within GFF3990
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 359,287 + +0.4 360,151 + +0.6 360,151 + +1.1 360,151 + -0.5 360,380 + GFF3989 0.11 -0.1 360,540 - GFF3989 0.23 -0.5 360,548 + GFF3989 0.23 +1.1 360,734 + GFF3989 0.37 +1.0 360,734 + GFF3989 0.37 +0.8 360,735 - GFF3989 0.37 +0.4 360,735 - GFF3989 0.37 +1.0 360,818 + GFF3989 0.43 +0.9 360,818 + GFF3989 0.43 +0.6 360,819 - GFF3989 0.43 +0.9 360,819 - GFF3989 0.43 +0.8 360,830 + GFF3989 0.44 +1.2 360,830 + GFF3989 0.44 +0.6 360,831 - GFF3989 0.44 +1.4 360,908 + GFF3989 0.50 -0.2 360,908 + GFF3989 0.50 +0.9 360,908 + GFF3989 0.50 +0.5 361,127 + GFF3989 0.66 +1.4 361,127 + GFF3989 0.66 +0.8 361,127 + GFF3989 0.66 +1.0 361,128 - GFF3989 0.66 +0.5 361,128 - GFF3989 0.66 +0.6 361,217 + GFF3989 0.72 +0.4 361,356 - GFF3989 0.82 +1.1 361,392 - GFF3989 0.85 +1.8 362,337 - GFF3990 0.53 +0.4 362,534 - GFF3990 0.67 +1.4
Or see this region's nucleotide sequence