Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3946 and GFF3947 overlap by 1 nucleotides GFF3947 and GFF3948 are separated by 109 nucleotides GFF3948 and GFF3949 are separated by 34 nucleotides GFF3949 and GFF3950 are separated by 146 nucleotides GFF3950 and GFF3951 are separated by 138 nucleotides
GFF3946 - Gamma-glutamyl phosphate reductase, at 315,078 to 316,400
GFF3946
GFF3947 - nicotinate-nucleotide adenylyltransferase, at 316,400 to 317,077
GFF3947
GFF3948 - Ribosomal silencing factor RsfS, at 317,187 to 317,552
GFF3948
GFF3949 - Ribosomal RNA large subunit methyltransferase H, at 317,587 to 318,069
GFF3949
GFF3950 - 50S ribosomal protein L36, at 318,216 to 318,341
GFF3950
GFF3951 - hypothetical protein, at 318,480 to 319,169
GFF3951
Position (kb) 317
318 Strain fitness (log2 ratio) -1
0
1 at 317.512 kb on - strand, within GFF3948 at 317.512 kb on - strand, within GFF3948 at 317.512 kb on - strand, within GFF3948 at 317.516 kb on + strand at 317.580 kb on - strand at 317.653 kb on + strand, within GFF3949 at 318.022 kb on + strand at 318.022 kb on + strand at 318.022 kb on + strand at 318.055 kb on + strand at 318.370 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 317,512 - GFF3948 0.89 +1.6 317,512 - GFF3948 0.89 -1.2 317,512 - GFF3948 0.89 -0.4 317,516 + +1.3 317,580 - +0.4 317,653 + GFF3949 0.14 +0.2 318,022 + +0.3 318,022 + -0.9 318,022 + -0.8 318,055 + -1.3 318,370 + +0.6
Or see this region's nucleotide sequence