Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3925 and GFF3926 overlap by 44 nucleotides GFF3926 and GFF3927 are separated by 129 nucleotides GFF3927 and GFF3928 are separated by 86 nucleotides GFF3928 and GFF3929 are separated by 84 nucleotides
GFF3925 - Cytochrome b561, at 293,747 to 294,298
GFF3925
GFF3926 - hypothetical protein, at 294,255 to 295,070
GFF3926
GFF3927 - GTP cyclohydrolase-2, at 295,200 to 296,312
GFF3927
GFF3928 - 3-beta-hydroxycholanate 3-dehydrogenase (NADP(+)), at 296,399 to 297,154
GFF3928
GFF3929 - Inner membrane protein YbhL, at 297,239 to 298,027
GFF3929
Position (kb) 295
296
297 Strain fitness (log2 ratio) -1
0
1
2 at 294.271 kb on - strand at 294.911 kb on + strand, within GFF3926 at 294.912 kb on - strand, within GFF3926 at 295.130 kb on + strand at 295.670 kb on - strand, within GFF3927 at 295.670 kb on - strand, within GFF3927 at 295.670 kb on - strand, within GFF3927 at 295.956 kb on + strand, within GFF3927 at 296.028 kb on + strand, within GFF3927 at 296.037 kb on + strand, within GFF3927 at 296.037 kb on + strand, within GFF3927 at 296.037 kb on + strand, within GFF3927 at 296.038 kb on - strand, within GFF3927 at 296.239 kb on - strand at 296.271 kb on + strand at 296.271 kb on + strand at 296.272 kb on - strand at 296.272 kb on - strand at 296.272 kb on - strand at 296.865 kb on - strand, within GFF3928 at 296.927 kb on + strand, within GFF3928 at 296.928 kb on - strand, within GFF3928 at 296.928 kb on - strand, within GFF3928 at 296.928 kb on - strand, within GFF3928 at 297.071 kb on + strand, within GFF3928 at 297.071 kb on + strand, within GFF3928 at 297.072 kb on - strand, within GFF3928 at 297.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 294,271 - -0.3 294,911 + GFF3926 0.80 +0.1 294,912 - GFF3926 0.81 +0.4 295,130 + -0.0 295,670 - GFF3927 0.42 +0.5 295,670 - GFF3927 0.42 -0.6 295,670 - GFF3927 0.42 -0.1 295,956 + GFF3927 0.68 -0.5 296,028 + GFF3927 0.74 -0.2 296,037 + GFF3927 0.75 +0.7 296,037 + GFF3927 0.75 +0.3 296,037 + GFF3927 0.75 -0.2 296,038 - GFF3927 0.75 -0.0 296,239 - +1.2 296,271 + -0.4 296,271 + +1.1 296,272 - +2.0 296,272 - -0.1 296,272 - +0.1 296,865 - GFF3928 0.62 -0.3 296,927 + GFF3928 0.70 +0.5 296,928 - GFF3928 0.70 -0.2 296,928 - GFF3928 0.70 +0.3 296,928 - GFF3928 0.70 -0.3 297,071 + GFF3928 0.89 -0.5 297,071 + GFF3928 0.89 -0.7 297,072 - GFF3928 0.89 +0.9 297,103 - -0.2
Or see this region's nucleotide sequence