Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3903 and GFF3904 are separated by 232 nucleotides GFF3904 and GFF3905 are separated by 264 nucleotides
GFF3903 - Aspartate/prephenate aminotransferase, at 269,474 to 270,661
GFF3903
GFF3904 - Monomeric sarcosine oxidase, at 270,894 to 272,021
GFF3904
GFF3905 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 272,286 to 273,053
GFF3905
Position (kb) 270
271
272
273 Strain fitness (log2 ratio) -2
-1
0
1 at 269.943 kb on + strand, within GFF3903 at 269.943 kb on + strand, within GFF3903 at 269.944 kb on - strand, within GFF3903 at 269.944 kb on - strand, within GFF3903 at 270.042 kb on + strand, within GFF3903 at 270.042 kb on + strand, within GFF3903 at 270.043 kb on - strand, within GFF3903 at 270.043 kb on - strand, within GFF3903 at 270.043 kb on - strand, within GFF3903 at 270.043 kb on - strand, within GFF3903 at 270.279 kb on + strand, within GFF3903 at 270.279 kb on + strand, within GFF3903 at 270.280 kb on - strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.348 kb on + strand, within GFF3903 at 270.349 kb on - strand, within GFF3903 at 270.469 kb on + strand, within GFF3903 at 270.469 kb on + strand, within GFF3903 at 270.469 kb on + strand, within GFF3903 at 270.469 kb on + strand, within GFF3903 at 270.470 kb on - strand, within GFF3903 at 270.470 kb on - strand, within GFF3903 at 270.471 kb on + strand, within GFF3903 at 270.471 kb on + strand, within GFF3903 at 270.471 kb on + strand, within GFF3903 at 271.092 kb on + strand, within GFF3904 at 271.093 kb on - strand, within GFF3904 at 271.474 kb on - strand, within GFF3904 at 271.557 kb on + strand, within GFF3904 at 271.557 kb on + strand, within GFF3904 at 271.558 kb on - strand, within GFF3904 at 271.665 kb on + strand, within GFF3904 at 271.666 kb on - strand, within GFF3904 at 272.003 kb on + strand at 272.004 kb on - strand at 272.004 kb on - strand at 272.065 kb on + strand at 272.066 kb on - strand at 272.137 kb on - strand at 272.205 kb on - strand at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.958 kb on + strand, within GFF3905 at 272.958 kb on + strand, within GFF3905 at 272.958 kb on + strand, within GFF3905
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 269,943 + GFF3903 0.39 -0.1 269,943 + GFF3903 0.39 -0.2 269,944 - GFF3903 0.40 +0.4 269,944 - GFF3903 0.40 +1.0 270,042 + GFF3903 0.48 +0.5 270,042 + GFF3903 0.48 -0.8 270,043 - GFF3903 0.48 -0.2 270,043 - GFF3903 0.48 +0.3 270,043 - GFF3903 0.48 +0.4 270,043 - GFF3903 0.48 +0.7 270,279 + GFF3903 0.68 +1.1 270,279 + GFF3903 0.68 +1.2 270,280 - GFF3903 0.68 +0.2 270,348 + GFF3903 0.74 +0.1 270,348 + GFF3903 0.74 +0.4 270,348 + GFF3903 0.74 +0.6 270,348 + GFF3903 0.74 +0.3 270,348 + GFF3903 0.74 +0.3 270,349 - GFF3903 0.74 +1.1 270,469 + GFF3903 0.84 +0.6 270,469 + GFF3903 0.84 +1.3 270,469 + GFF3903 0.84 +0.4 270,469 + GFF3903 0.84 +0.8 270,470 - GFF3903 0.84 -1.3 270,470 - GFF3903 0.84 +0.6 270,471 + GFF3903 0.84 -0.4 270,471 + GFF3903 0.84 -0.1 270,471 + GFF3903 0.84 +0.4 271,092 + GFF3904 0.18 -0.4 271,093 - GFF3904 0.18 +0.0 271,474 - GFF3904 0.51 -0.5 271,557 + GFF3904 0.59 +0.0 271,557 + GFF3904 0.59 +0.1 271,558 - GFF3904 0.59 -0.7 271,665 + GFF3904 0.68 -0.6 271,666 - GFF3904 0.68 -2.3 272,003 + +0.6 272,004 - +0.1 272,004 - -0.7 272,065 + +0.7 272,066 - +1.0 272,137 - +0.1 272,205 - -0.3 272,370 + GFF3905 0.11 -0.2 272,370 + GFF3905 0.11 +1.1 272,370 + GFF3905 0.11 +1.0 272,370 + GFF3905 0.11 -0.1 272,371 - GFF3905 0.11 +0.3 272,371 - GFF3905 0.11 -0.2 272,371 - GFF3905 0.11 +1.1 272,958 + GFF3905 0.88 -0.5 272,958 + GFF3905 0.88 -0.3 272,958 + GFF3905 0.88 +0.6
Or see this region's nucleotide sequence