Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3874 and GFF3875 are separated by 2 nucleotides GFF3875 and GFF3876 are separated by 48 nucleotides GFF3876 and GFF3877 are separated by 63 nucleotides
GFF3874 - Acetylglutamate kinase, at 240,135 to 241,040
GFF3874
GFF3875 - L-methionine sulfoximine/L-methionine sulfone acetyltransferase, at 241,043 to 241,582
GFF3875
GFF3876 - DNA replication and repair protein RecF, at 241,631 to 242,779
GFF3876
GFF3877 - Beta sliding clamp, at 242,843 to 243,961
GFF3877
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1 at 241.118 kb on - strand, within GFF3875 at 241.118 kb on - strand, within GFF3875 at 241.326 kb on + strand, within GFF3875 at 241.347 kb on + strand, within GFF3875 at 241.353 kb on + strand, within GFF3875 at 241.354 kb on - strand, within GFF3875 at 241.383 kb on + strand, within GFF3875 at 241.384 kb on - strand, within GFF3875 at 241.384 kb on - strand, within GFF3875 at 241.389 kb on + strand, within GFF3875 at 241.389 kb on + strand, within GFF3875 at 241.390 kb on - strand, within GFF3875 at 241.390 kb on - strand, within GFF3875 at 241.390 kb on - strand, within GFF3875 at 241.426 kb on - strand, within GFF3875 at 241.426 kb on - strand, within GFF3875 at 241.531 kb on - strand at 241.531 kb on - strand at 241.594 kb on - strand at 241.783 kb on - strand, within GFF3876 at 241.783 kb on - strand, within GFF3876 at 242.566 kb on + strand, within GFF3876 at 242.567 kb on - strand, within GFF3876 at 242.686 kb on + strand at 242.687 kb on - strand at 242.687 kb on - strand at 242.687 kb on - strand at 242.753 kb on + strand at 242.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 241,118 - GFF3875 0.14 +0.5 241,118 - GFF3875 0.14 +0.5 241,326 + GFF3875 0.52 +0.5 241,347 + GFF3875 0.56 +0.4 241,353 + GFF3875 0.57 -0.7 241,354 - GFF3875 0.58 +0.9 241,383 + GFF3875 0.63 -0.1 241,384 - GFF3875 0.63 +1.0 241,384 - GFF3875 0.63 -0.7 241,389 + GFF3875 0.64 -1.9 241,389 + GFF3875 0.64 -0.1 241,390 - GFF3875 0.64 +0.4 241,390 - GFF3875 0.64 +0.1 241,390 - GFF3875 0.64 +0.5 241,426 - GFF3875 0.71 +0.2 241,426 - GFF3875 0.71 -1.3 241,531 - +0.0 241,531 - +1.0 241,594 - +0.3 241,783 - GFF3876 0.13 +0.6 241,783 - GFF3876 0.13 +0.8 242,566 + GFF3876 0.81 +0.9 242,567 - GFF3876 0.81 -0.3 242,686 + -0.7 242,687 - +0.3 242,687 - -1.4 242,687 - +0.5 242,753 + -0.2 242,753 + +0.1
Or see this region's nucleotide sequence