Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF385 and GFF386 are separated by 64 nucleotides GFF386 and GFF387 are separated by 12 nucleotides GFF387 and GFF388 are separated by 132 nucleotides GFF388 and GFF389 are separated by 6 nucleotides
GFF385 - hypothetical protein, at 396,665 to 397,837
GFF385
GFF386 - hypothetical protein, at 397,902 to 398,651
GFF386
GFF387 - hypothetical protein, at 398,664 to 399,128
GFF387
GFF388 - hypothetical protein, at 399,261 to 400,082
GFF388
GFF389 - Acylphosphatase, at 400,089 to 400,379
GFF389
Position (kb) 398
399
400 Strain fitness (log2 ratio) -1
0
1
2 at 397.844 kb on + strand at 398.056 kb on + strand, within GFF386 at 398.056 kb on + strand, within GFF386 at 398.056 kb on + strand, within GFF386 at 398.056 kb on + strand, within GFF386 at 398.057 kb on - strand, within GFF386 at 398.152 kb on + strand, within GFF386 at 398.152 kb on + strand, within GFF386 at 398.152 kb on + strand, within GFF386 at 398.534 kb on - strand, within GFF386 at 398.534 kb on - strand, within GFF386 at 399.052 kb on + strand, within GFF387 at 399.052 kb on + strand, within GFF387 at 399.052 kb on + strand, within GFF387 at 399.053 kb on - strand, within GFF387 at 399.053 kb on - strand, within GFF387 at 399.053 kb on - strand, within GFF387 at 399.145 kb on - strand at 399.145 kb on - strand at 399.159 kb on + strand at 399.159 kb on + strand at 399.160 kb on - strand at 399.363 kb on + strand, within GFF388 at 399.363 kb on + strand, within GFF388 at 399.363 kb on + strand, within GFF388 at 399.363 kb on + strand, within GFF388 at 399.364 kb on - strand, within GFF388 at 399.364 kb on - strand, within GFF388 at 399.459 kb on + strand, within GFF388 at 399.561 kb on + strand, within GFF388 at 399.562 kb on - strand, within GFF388 at 399.762 kb on + strand, within GFF388 at 399.763 kb on - strand, within GFF388 at 399.763 kb on - strand, within GFF388 at 399.778 kb on - strand, within GFF388 at 399.897 kb on + strand, within GFF388 at 399.898 kb on - strand, within GFF388 at 399.898 kb on - strand, within GFF388 at 399.951 kb on + strand, within GFF388 at 399.951 kb on + strand, within GFF388 at 399.951 kb on + strand, within GFF388 at 399.951 kb on + strand, within GFF388 at 399.952 kb on - strand, within GFF388 at 399.972 kb on + strand, within GFF388 at 400.008 kb on + strand at 400.008 kb on + strand at 400.009 kb on - strand at 400.080 kb on + strand at 400.081 kb on - strand at 400.095 kb on + strand at 400.095 kb on + strand at 400.096 kb on - strand at 400.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 397,844 + +0.0 398,056 + GFF386 0.21 -1.4 398,056 + GFF386 0.21 +0.6 398,056 + GFF386 0.21 +0.2 398,056 + GFF386 0.21 +1.0 398,057 - GFF386 0.21 -0.8 398,152 + GFF386 0.33 +1.4 398,152 + GFF386 0.33 -1.0 398,152 + GFF386 0.33 -0.2 398,534 - GFF386 0.84 +0.1 398,534 - GFF386 0.84 +0.8 399,052 + GFF387 0.83 -0.3 399,052 + GFF387 0.83 -0.9 399,052 + GFF387 0.83 -0.3 399,053 - GFF387 0.84 -0.6 399,053 - GFF387 0.84 -1.4 399,053 - GFF387 0.84 -0.6 399,145 - -0.3 399,145 - +1.3 399,159 + -0.9 399,159 + -1.0 399,160 - +0.6 399,363 + GFF388 0.12 -0.1 399,363 + GFF388 0.12 -0.7 399,363 + GFF388 0.12 +0.7 399,363 + GFF388 0.12 +0.7 399,364 - GFF388 0.13 +0.0 399,364 - GFF388 0.13 +1.1 399,459 + GFF388 0.24 -0.2 399,561 + GFF388 0.36 +0.6 399,562 - GFF388 0.37 +0.4 399,762 + GFF388 0.61 +2.0 399,763 - GFF388 0.61 +0.4 399,763 - GFF388 0.61 +0.2 399,778 - GFF388 0.63 +0.1 399,897 + GFF388 0.77 +0.1 399,898 - GFF388 0.77 -1.1 399,898 - GFF388 0.77 +1.2 399,951 + GFF388 0.84 -0.3 399,951 + GFF388 0.84 -0.1 399,951 + GFF388 0.84 +0.3 399,951 + GFF388 0.84 -0.9 399,952 - GFF388 0.84 +0.2 399,972 + GFF388 0.86 -0.9 400,008 + +0.2 400,008 + -0.8 400,009 - +1.7 400,080 + -0.1 400,081 - -0.1 400,095 + -0.6 400,095 + +0.0 400,096 - +0.4 400,096 - -0.3
Or see this region's nucleotide sequence