Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3840 and GFF3841 are separated by 323 nucleotides GFF3841 and GFF3842 are separated by 1 nucleotides
GFF3840 - Thiol:disulfide interchange protein TlpA, at 201,477 to 202,277
GFF3840
GFF3841 - UDP-N-acetylglucosamine 2-epimerase, at 202,601 to 203,758
GFF3841
GFF3842 - hypothetical protein, at 203,760 to 206,093
GFF3842
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1 at 202.301 kb on - strand at 202.492 kb on - strand at 202.494 kb on - strand at 202.570 kb on + strand at 203.170 kb on + strand, within GFF3841 at 203.170 kb on + strand, within GFF3841 at 203.170 kb on + strand, within GFF3841 at 203.366 kb on + strand, within GFF3841 at 203.586 kb on - strand, within GFF3841 at 203.594 kb on + strand, within GFF3841 at 203.595 kb on - strand, within GFF3841 at 203.615 kb on + strand, within GFF3841 at 203.949 kb on + strand at 203.950 kb on - strand at 203.964 kb on + strand at 203.965 kb on - strand at 204.105 kb on + strand, within GFF3842 at 204.106 kb on - strand, within GFF3842 at 204.106 kb on - strand, within GFF3842 at 204.106 kb on - strand, within GFF3842 at 204.412 kb on - strand, within GFF3842 at 204.412 kb on - strand, within GFF3842 at 204.417 kb on + strand, within GFF3842 at 204.417 kb on + strand, within GFF3842 at 204.418 kb on - strand, within GFF3842 at 204.516 kb on + strand, within GFF3842 at 204.516 kb on + strand, within GFF3842 at 204.516 kb on + strand, within GFF3842 at 204.516 kb on + strand, within GFF3842 at 204.517 kb on - strand, within GFF3842 at 204.517 kb on - strand, within GFF3842 at 204.517 kb on - strand, within GFF3842 at 204.681 kb on + strand, within GFF3842 at 204.681 kb on + strand, within GFF3842
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 202,301 - -0.2 202,492 - -0.0 202,494 - -0.4 202,570 + -0.2 203,170 + GFF3841 0.49 +0.3 203,170 + GFF3841 0.49 -0.5 203,170 + GFF3841 0.49 -0.5 203,366 + GFF3841 0.66 -1.1 203,586 - GFF3841 0.85 -0.3 203,594 + GFF3841 0.86 +0.2 203,595 - GFF3841 0.86 +0.9 203,615 + GFF3841 0.88 -1.7 203,949 + -0.9 203,950 - +0.1 203,964 + -0.5 203,965 - +0.9 204,105 + GFF3842 0.15 -0.6 204,106 - GFF3842 0.15 -0.1 204,106 - GFF3842 0.15 -0.0 204,106 - GFF3842 0.15 +0.4 204,412 - GFF3842 0.28 +0.6 204,412 - GFF3842 0.28 +0.6 204,417 + GFF3842 0.28 +0.2 204,417 + GFF3842 0.28 -0.1 204,418 - GFF3842 0.28 -0.7 204,516 + GFF3842 0.32 +0.7 204,516 + GFF3842 0.32 +0.8 204,516 + GFF3842 0.32 +0.1 204,516 + GFF3842 0.32 -0.0 204,517 - GFF3842 0.32 -1.2 204,517 - GFF3842 0.32 +1.0 204,517 - GFF3842 0.32 -2.1 204,681 + GFF3842 0.39 -1.3 204,681 + GFF3842 0.39 +0.2
Or see this region's nucleotide sequence