Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3821 and GFF3822 overlap by 1 nucleotides GFF3822 and GFF3823 are separated by 190 nucleotides GFF3823 and GFF3824 overlap by 4 nucleotides GFF3824 and GFF3825 are separated by 43 nucleotides
GFF3821 - hypothetical protein, at 177,565 to 177,876
GFF3821
GFF3822 - hypothetical protein, at 177,876 to 178,376
GFF3822
GFF3823 - hypothetical protein, at 178,567 to 181,113
GFF3823
GFF3824 - putative ABC transporter ATP-binding protein, at 181,110 to 181,784
GFF3824
GFF3825 - hypothetical protein, at 181,828 to 182,553
GFF3825
Position (kb) 178
179
180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.590 kb on + strand at 177.591 kb on - strand at 177.695 kb on + strand, within GFF3821 at 177.696 kb on - strand, within GFF3821 at 177.696 kb on - strand, within GFF3821 at 178.255 kb on + strand, within GFF3822 at 178.256 kb on - strand, within GFF3822 at 178.256 kb on - strand, within GFF3822 at 178.547 kb on - strand at 178.547 kb on - strand at 178.547 kb on - strand at 178.547 kb on - strand at 178.547 kb on - strand at 178.552 kb on - strand at 178.560 kb on + strand at 178.568 kb on + strand at 178.787 kb on + strand at 178.800 kb on - strand at 178.856 kb on + strand, within GFF3823 at 178.856 kb on + strand, within GFF3823 at 178.857 kb on - strand, within GFF3823 at 178.857 kb on - strand, within GFF3823 at 179.100 kb on + strand, within GFF3823 at 179.100 kb on + strand, within GFF3823 at 179.100 kb on + strand, within GFF3823 at 179.100 kb on + strand, within GFF3823 at 179.101 kb on - strand, within GFF3823 at 179.101 kb on - strand, within GFF3823 at 179.102 kb on + strand, within GFF3823 at 179.102 kb on + strand, within GFF3823 at 179.103 kb on - strand, within GFF3823 at 179.103 kb on - strand, within GFF3823 at 179.894 kb on + strand, within GFF3823 at 179.894 kb on + strand, within GFF3823 at 179.895 kb on - strand, within GFF3823 at 180.173 kb on + strand, within GFF3823 at 180.174 kb on - strand, within GFF3823 at 180.467 kb on + strand, within GFF3823 at 180.468 kb on - strand, within GFF3823 at 180.761 kb on + strand, within GFF3823 at 180.762 kb on - strand, within GFF3823 at 180.762 kb on - strand, within GFF3823 at 180.762 kb on - strand, within GFF3823 at 180.762 kb on - strand, within GFF3823 at 180.762 kb on - strand, within GFF3823 at 181.820 kb on + strand at 181.821 kb on - strand at 181.910 kb on + strand, within GFF3825 at 181.918 kb on - strand, within GFF3825
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 177,590 + -1.1 177,591 - +0.6 177,695 + GFF3821 0.42 -0.3 177,696 - GFF3821 0.42 +1.2 177,696 - GFF3821 0.42 -0.6 178,255 + GFF3822 0.76 +0.1 178,256 - GFF3822 0.76 +0.5 178,256 - GFF3822 0.76 +0.0 178,547 - -1.9 178,547 - -0.7 178,547 - -0.3 178,547 - -0.4 178,547 - -0.2 178,552 - +0.2 178,560 + -0.4 178,568 + +0.7 178,787 + +0.2 178,800 - +0.8 178,856 + GFF3823 0.11 -0.4 178,856 + GFF3823 0.11 -0.3 178,857 - GFF3823 0.11 +0.1 178,857 - GFF3823 0.11 -0.1 179,100 + GFF3823 0.21 +0.0 179,100 + GFF3823 0.21 +0.2 179,100 + GFF3823 0.21 -1.2 179,100 + GFF3823 0.21 -1.1 179,101 - GFF3823 0.21 -0.2 179,101 - GFF3823 0.21 +0.8 179,102 + GFF3823 0.21 -0.2 179,102 + GFF3823 0.21 +0.5 179,103 - GFF3823 0.21 -0.6 179,103 - GFF3823 0.21 +1.0 179,894 + GFF3823 0.52 -1.0 179,894 + GFF3823 0.52 -0.5 179,895 - GFF3823 0.52 -0.1 180,173 + GFF3823 0.63 +2.0 180,174 - GFF3823 0.63 +2.3 180,467 + GFF3823 0.75 -0.1 180,468 - GFF3823 0.75 -0.2 180,761 + GFF3823 0.86 +0.1 180,762 - GFF3823 0.86 -1.2 180,762 - GFF3823 0.86 -0.5 180,762 - GFF3823 0.86 -0.0 180,762 - GFF3823 0.86 -0.6 180,762 - GFF3823 0.86 -0.5 181,820 + -0.2 181,821 - +1.3 181,910 + GFF3825 0.11 -0.6 181,918 - GFF3825 0.12 +1.4
Or see this region's nucleotide sequence