Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3819 and GFF3820 are separated by 130 nucleotides GFF3820 and GFF3821 are separated by 111 nucleotides GFF3821 and GFF3822 overlap by 1 nucleotides
GFF3819 - hypothetical protein, at 175,722 to 177,065
GFF3819
GFF3820 - hypothetical protein, at 177,196 to 177,453
GFF3820
GFF3821 - hypothetical protein, at 177,565 to 177,876
GFF3821
GFF3822 - hypothetical protein, at 177,876 to 178,376
GFF3822
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 176.200 kb on + strand, within GFF3819 at 176.201 kb on - strand, within GFF3819 at 176.206 kb on + strand, within GFF3819 at 176.207 kb on - strand, within GFF3819 at 176.207 kb on - strand, within GFF3819 at 176.207 kb on - strand, within GFF3819 at 176.207 kb on - strand, within GFF3819 at 176.422 kb on + strand, within GFF3819 at 176.422 kb on + strand, within GFF3819 at 176.422 kb on + strand, within GFF3819 at 176.423 kb on - strand, within GFF3819 at 176.764 kb on + strand, within GFF3819 at 176.764 kb on + strand, within GFF3819 at 176.764 kb on + strand, within GFF3819 at 176.765 kb on - strand, within GFF3819 at 176.765 kb on - strand, within GFF3819 at 176.827 kb on + strand, within GFF3819 at 176.827 kb on + strand, within GFF3819 at 176.828 kb on - strand, within GFF3819 at 176.871 kb on + strand, within GFF3819 at 176.872 kb on - strand, within GFF3819 at 176.872 kb on - strand, within GFF3819 at 177.156 kb on + strand at 177.263 kb on + strand, within GFF3820 at 177.275 kb on + strand, within GFF3820 at 177.275 kb on + strand, within GFF3820 at 177.276 kb on - strand, within GFF3820 at 177.456 kb on - strand at 177.513 kb on + strand at 177.514 kb on - strand at 177.590 kb on + strand at 177.591 kb on - strand at 177.695 kb on + strand, within GFF3821 at 177.696 kb on - strand, within GFF3821 at 177.696 kb on - strand, within GFF3821 at 178.255 kb on + strand, within GFF3822 at 178.256 kb on - strand, within GFF3822 at 178.256 kb on - strand, within GFF3822
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 176,200 + GFF3819 0.36 -0.4 176,201 - GFF3819 0.36 +0.4 176,206 + GFF3819 0.36 -0.2 176,207 - GFF3819 0.36 -0.4 176,207 - GFF3819 0.36 -0.4 176,207 - GFF3819 0.36 -1.1 176,207 - GFF3819 0.36 +0.6 176,422 + GFF3819 0.52 -0.4 176,422 + GFF3819 0.52 -0.3 176,422 + GFF3819 0.52 -1.2 176,423 - GFF3819 0.52 +0.2 176,764 + GFF3819 0.78 -0.7 176,764 + GFF3819 0.78 +0.3 176,764 + GFF3819 0.78 -0.3 176,765 - GFF3819 0.78 -0.7 176,765 - GFF3819 0.78 -0.5 176,827 + GFF3819 0.82 +0.1 176,827 + GFF3819 0.82 +0.1 176,828 - GFF3819 0.82 -0.4 176,871 + GFF3819 0.85 -2.3 176,872 - GFF3819 0.86 -0.4 176,872 - GFF3819 0.86 -0.2 177,156 + -0.2 177,263 + GFF3820 0.26 -0.7 177,275 + GFF3820 0.31 -1.6 177,275 + GFF3820 0.31 -1.5 177,276 - GFF3820 0.31 +0.1 177,456 - -1.2 177,513 + -0.1 177,514 - -0.1 177,590 + -1.1 177,591 - +0.6 177,695 + GFF3821 0.42 -0.3 177,696 - GFF3821 0.42 +1.2 177,696 - GFF3821 0.42 -0.6 178,255 + GFF3822 0.76 +0.1 178,256 - GFF3822 0.76 +0.5 178,256 - GFF3822 0.76 +0.0
Or see this region's nucleotide sequence