Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3808 and GFF3809 overlap by 29 nucleotides GFF3809 and GFF3810 overlap by 4 nucleotides GFF3810 and GFF3811 are separated by 137 nucleotides
GFF3808 - hypothetical protein, at 167,049 to 167,591
GFF3808
GFF3809 - hypothetical protein, at 167,563 to 168,456
GFF3809
GFF3810 - hypothetical protein, at 168,453 to 169,067
GFF3810
GFF3811 - hypothetical protein, at 169,205 to 170,053
GFF3811
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1 at 167.463 kb on + strand, within GFF3808 at 167.464 kb on - strand, within GFF3808 at 167.464 kb on - strand, within GFF3808 at 167.478 kb on + strand, within GFF3808 at 167.478 kb on + strand, within GFF3808 at 167.478 kb on + strand, within GFF3808 at 167.478 kb on + strand, within GFF3808 at 167.479 kb on - strand, within GFF3808 at 167.479 kb on - strand, within GFF3808 at 167.479 kb on - strand, within GFF3808 at 167.485 kb on - strand, within GFF3808 at 167.824 kb on + strand, within GFF3809 at 167.825 kb on - strand, within GFF3809 at 167.825 kb on - strand, within GFF3809 at 167.825 kb on - strand, within GFF3809 at 167.825 kb on - strand, within GFF3809 at 168.096 kb on + strand, within GFF3809 at 168.096 kb on + strand, within GFF3809 at 168.096 kb on + strand, within GFF3809 at 168.096 kb on + strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.097 kb on - strand, within GFF3809 at 168.100 kb on + strand, within GFF3809 at 168.101 kb on - strand, within GFF3809 at 168.124 kb on + strand, within GFF3809 at 168.124 kb on + strand, within GFF3809 at 168.125 kb on - strand, within GFF3809 at 168.846 kb on - strand, within GFF3810 at 168.861 kb on + strand, within GFF3810 at 168.862 kb on - strand, within GFF3810 at 168.862 kb on - strand, within GFF3810 at 168.975 kb on + strand, within GFF3810 at 168.976 kb on - strand, within GFF3810 at 168.981 kb on + strand, within GFF3810 at 168.982 kb on - strand, within GFF3810 at 169.216 kb on - strand at 169.617 kb on - strand, within GFF3811 at 169.676 kb on + strand, within GFF3811 at 169.677 kb on - strand, within GFF3811 at 169.677 kb on - strand, within GFF3811 at 169.854 kb on - strand, within GFF3811 at 169.949 kb on - strand, within GFF3811 at 169.949 kb on - strand, within GFF3811 at 170.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 167,463 + GFF3808 0.76 +0.2 167,464 - GFF3808 0.76 +0.2 167,464 - GFF3808 0.76 -0.8 167,478 + GFF3808 0.79 -0.1 167,478 + GFF3808 0.79 -0.6 167,478 + GFF3808 0.79 +0.3 167,478 + GFF3808 0.79 +0.2 167,479 - GFF3808 0.79 +0.0 167,479 - GFF3808 0.79 +0.6 167,479 - GFF3808 0.79 +0.6 167,485 - GFF3808 0.80 -0.2 167,824 + GFF3809 0.29 -0.5 167,825 - GFF3809 0.29 +0.4 167,825 - GFF3809 0.29 -0.2 167,825 - GFF3809 0.29 -0.3 167,825 - GFF3809 0.29 -0.4 168,096 + GFF3809 0.60 -0.4 168,096 + GFF3809 0.60 +1.1 168,096 + GFF3809 0.60 -0.9 168,096 + GFF3809 0.60 -0.7 168,097 - GFF3809 0.60 -0.3 168,097 - GFF3809 0.60 -1.2 168,097 - GFF3809 0.60 +0.3 168,097 - GFF3809 0.60 -1.4 168,097 - GFF3809 0.60 -1.0 168,097 - GFF3809 0.60 -0.0 168,100 + GFF3809 0.60 -0.3 168,101 - GFF3809 0.60 -0.0 168,124 + GFF3809 0.63 -0.5 168,124 + GFF3809 0.63 -0.2 168,125 - GFF3809 0.63 +0.3 168,846 - GFF3810 0.64 -0.1 168,861 + GFF3810 0.66 -0.6 168,862 - GFF3810 0.67 -0.6 168,862 - GFF3810 0.67 -0.2 168,975 + GFF3810 0.85 +0.5 168,976 - GFF3810 0.85 -1.7 168,981 + GFF3810 0.86 -0.4 168,982 - GFF3810 0.86 -0.6 169,216 - -0.9 169,617 - GFF3811 0.49 -0.3 169,676 + GFF3811 0.55 -2.4 169,677 - GFF3811 0.56 +1.6 169,677 - GFF3811 0.56 +0.6 169,854 - GFF3811 0.76 -1.0 169,949 - GFF3811 0.88 +0.4 169,949 - GFF3811 0.88 -0.5 170,067 - +0.2
Or see this region's nucleotide sequence