Strain Fitness in Xanthobacter sp. DMC5 around GFF3799

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3798 and GFF3799 are separated by 4 nucleotidesGFF3799 and GFF3800 are separated by 77 nucleotides GFF3798 - High-affinity branched-chain amino acid transport system permease protein LivH, at 155,246 to 156,139 GFF3798 GFF3799 - hypothetical protein, at 156,144 to 157,214 GFF3799 GFF3800 - hypothetical protein, at 157,292 to 158,572 GFF3800 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 155.180 kb on - strandat 155.180 kb on - strandat 155.225 kb on - strandat 155.278 kb on - strandat 155.303 kb on + strandat 155.304 kb on - strandat 155.336 kb on + strand, within GFF3798at 155.337 kb on - strand, within GFF3798at 155.532 kb on - strand, within GFF3798at 155.672 kb on + strand, within GFF3798at 155.672 kb on + strand, within GFF3798at 155.672 kb on + strand, within GFF3798at 155.672 kb on + strand, within GFF3798at 155.672 kb on + strand, within GFF3798at 155.673 kb on - strand, within GFF3798at 155.673 kb on - strand, within GFF3798at 155.673 kb on - strand, within GFF3798at 155.673 kb on - strand, within GFF3798at 155.729 kb on - strand, within GFF3798at 155.732 kb on + strand, within GFF3798at 155.907 kb on - strand, within GFF3798at 155.907 kb on - strand, within GFF3798at 155.907 kb on - strand, within GFF3798at 155.907 kb on - strand, within GFF3798at 156.014 kb on + strand, within GFF3798at 156.014 kb on + strand, within GFF3798at 156.015 kb on - strand, within GFF3798at 156.029 kb on + strand, within GFF3798at 156.030 kb on - strand, within GFF3798at 156.051 kb on - strandat 156.068 kb on + strandat 156.178 kb on - strandat 156.189 kb on + strandat 156.190 kb on - strandat 156.190 kb on - strandat 156.190 kb on - strandat 156.190 kb on - strandat 156.288 kb on + strand, within GFF3799at 156.289 kb on - strand, within GFF3799at 156.289 kb on - strand, within GFF3799at 156.435 kb on - strand, within GFF3799at 156.534 kb on + strand, within GFF3799at 156.535 kb on - strand, within GFF3799at 156.651 kb on + strand, within GFF3799at 156.675 kb on + strand, within GFF3799at 156.675 kb on + strand, within GFF3799at 156.681 kb on + strand, within GFF3799at 156.681 kb on + strand, within GFF3799at 156.682 kb on - strand, within GFF3799at 156.682 kb on - strand, within GFF3799at 156.712 kb on - strand, within GFF3799at 156.777 kb on + strand, within GFF3799at 156.777 kb on + strand, within GFF3799at 156.778 kb on - strand, within GFF3799at 156.778 kb on - strand, within GFF3799at 156.778 kb on - strand, within GFF3799at 156.778 kb on - strand, within GFF3799at 156.778 kb on - strand, within GFF3799at 156.816 kb on + strand, within GFF3799at 156.816 kb on + strand, within GFF3799at 156.816 kb on + strand, within GFF3799at 156.817 kb on - strand, within GFF3799at 156.817 kb on - strand, within GFF3799at 156.850 kb on - strand, within GFF3799at 156.850 kb on - strand, within GFF3799at 156.874 kb on - strand, within GFF3799at 156.874 kb on - strand, within GFF3799at 156.882 kb on + strand, within GFF3799at 156.882 kb on + strand, within GFF3799at 156.882 kb on + strand, within GFF3799at 156.882 kb on + strand, within GFF3799at 156.882 kb on + strand, within GFF3799at 156.882 kb on + strand, within GFF3799at 156.883 kb on - strand, within GFF3799at 156.883 kb on - strand, within GFF3799at 156.925 kb on - strand, within GFF3799at 157.092 kb on + strand, within GFF3799at 157.092 kb on + strand, within GFF3799at 157.092 kb on + strand, within GFF3799at 157.092 kb on + strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.093 kb on - strand, within GFF3799at 157.095 kb on - strand, within GFF3799at 157.095 kb on - strand, within GFF3799at 157.185 kb on + strandat 157.186 kb on - strandat 157.197 kb on + strandat 157.197 kb on + strandat 157.197 kb on + strandat 157.197 kb on + strandat 157.198 kb on - strandat 157.209 kb on + strandat 157.209 kb on + strandat 157.209 kb on + strandat 157.209 kb on + strandat 157.389 kb on - strandat 157.389 kb on - strandat 157.389 kb on - strandat 157.508 kb on + strand, within GFF3800at 157.514 kb on + strand, within GFF3800at 157.545 kb on - strand, within GFF3800at 157.644 kb on - strand, within GFF3800at 157.646 kb on + strand, within GFF3800at 157.646 kb on + strand, within GFF3800at 157.646 kb on + strand, within GFF3800at 157.646 kb on + strand, within GFF3800at 157.647 kb on - strand, within GFF3800at 157.647 kb on - strand, within GFF3800at 157.658 kb on + strand, within GFF3800at 157.658 kb on + strand, within GFF3800at 157.658 kb on + strand, within GFF3800at 157.659 kb on - strand, within GFF3800at 157.659 kb on - strand, within GFF3800at 157.659 kb on - strand, within GFF3800at 157.659 kb on - strand, within GFF3800at 157.734 kb on - strand, within GFF3800at 157.746 kb on - strand, within GFF3800at 157.850 kb on + strand, within GFF3800at 157.884 kb on - strand, within GFF3800at 157.884 kb on - strand, within GFF3800at 157.946 kb on + strand, within GFF3800at 157.947 kb on - strand, within GFF3800at 157.947 kb on - strand, within GFF3800at 157.947 kb on - strand, within GFF3800at 157.988 kb on + strand, within GFF3800at 157.988 kb on + strand, within GFF3800at 157.989 kb on - strand, within GFF3800at 157.989 kb on - strand, within GFF3800at 157.989 kb on - strand, within GFF3800at 157.994 kb on + strand, within GFF3800at 157.994 kb on + strand, within GFF3800at 157.995 kb on - strand, within GFF3800at 158.198 kb on + strand, within GFF3800at 158.205 kb on - strand, within GFF3800

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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155,180 - +0.8
155,180 - +0.5
155,225 - +0.5
155,278 - -0.1
155,303 + -0.2
155,304 - -0.1
155,336 + GFF3798 0.10 +0.3
155,337 - GFF3798 0.10 +0.5
155,532 - GFF3798 0.32 +0.9
155,672 + GFF3798 0.48 -0.4
155,672 + GFF3798 0.48 -0.5
155,672 + GFF3798 0.48 +0.2
155,672 + GFF3798 0.48 -0.1
155,672 + GFF3798 0.48 +0.3
155,673 - GFF3798 0.48 +0.7
155,673 - GFF3798 0.48 -0.2
155,673 - GFF3798 0.48 +0.1
155,673 - GFF3798 0.48 +0.3
155,729 - GFF3798 0.54 +0.2
155,732 + GFF3798 0.54 +0.6
155,907 - GFF3798 0.74 +0.3
155,907 - GFF3798 0.74 +1.0
155,907 - GFF3798 0.74 -0.1
155,907 - GFF3798 0.74 +0.4
156,014 + GFF3798 0.86 -1.0
156,014 + GFF3798 0.86 -0.1
156,015 - GFF3798 0.86 +0.6
156,029 + GFF3798 0.88 +0.4
156,030 - GFF3798 0.88 +0.6
156,051 - -0.3
156,068 + -0.5
156,178 - +0.8
156,189 + +0.8
156,190 - +0.7
156,190 - +0.8
156,190 - +0.5
156,190 - -1.3
156,288 + GFF3799 0.13 +0.4
156,289 - GFF3799 0.14 -1.2
156,289 - GFF3799 0.14 +1.4
156,435 - GFF3799 0.27 +0.4
156,534 + GFF3799 0.36 +1.1
156,535 - GFF3799 0.37 +0.1
156,651 + GFF3799 0.47 -0.4
156,675 + GFF3799 0.50 -0.2
156,675 + GFF3799 0.50 -0.9
156,681 + GFF3799 0.50 -0.4
156,681 + GFF3799 0.50 +0.5
156,682 - GFF3799 0.50 +0.9
156,682 - GFF3799 0.50 -0.0
156,712 - GFF3799 0.53 +1.0
156,777 + GFF3799 0.59 -1.5
156,777 + GFF3799 0.59 -1.4
156,778 - GFF3799 0.59 +0.8
156,778 - GFF3799 0.59 +1.4
156,778 - GFF3799 0.59 +0.6
156,778 - GFF3799 0.59 +0.6
156,778 - GFF3799 0.59 +1.1
156,816 + GFF3799 0.63 -0.4
156,816 + GFF3799 0.63 -2.9
156,816 + GFF3799 0.63 +0.8
156,817 - GFF3799 0.63 +1.1
156,817 - GFF3799 0.63 +0.2
156,850 - GFF3799 0.66 +0.2
156,850 - GFF3799 0.66 -0.4
156,874 - GFF3799 0.68 +0.3
156,874 - GFF3799 0.68 +1.4
156,882 + GFF3799 0.69 +0.3
156,882 + GFF3799 0.69 +0.6
156,882 + GFF3799 0.69 -0.7
156,882 + GFF3799 0.69 -0.0
156,882 + GFF3799 0.69 -0.2
156,882 + GFF3799 0.69 -0.1
156,883 - GFF3799 0.69 +0.6
156,883 - GFF3799 0.69 +1.2
156,925 - GFF3799 0.73 -1.2
157,092 + GFF3799 0.89 +0.5
157,092 + GFF3799 0.89 -0.4
157,092 + GFF3799 0.89 -0.3
157,092 + GFF3799 0.89 -1.5
157,093 - GFF3799 0.89 +0.7
157,093 - GFF3799 0.89 +1.0
157,093 - GFF3799 0.89 -0.2
157,093 - GFF3799 0.89 +0.6
157,093 - GFF3799 0.89 +0.3
157,093 - GFF3799 0.89 -0.0
157,093 - GFF3799 0.89 +0.6
157,093 - GFF3799 0.89 +0.2
157,093 - GFF3799 0.89 +0.2
157,093 - GFF3799 0.89 +0.8
157,095 - GFF3799 0.89 -0.4
157,095 - GFF3799 0.89 +0.5
157,185 + +0.1
157,186 - -0.1
157,197 + -1.6
157,197 + -0.1
157,197 + +1.6
157,197 + -0.1
157,198 - +0.8
157,209 + +0.5
157,209 + -0.0
157,209 + -0.2
157,209 + +0.3
157,389 - +1.1
157,389 - +1.4
157,389 - +0.6
157,508 + GFF3800 0.17 +0.2
157,514 + GFF3800 0.17 +2.1
157,545 - GFF3800 0.20 +1.4
157,644 - GFF3800 0.27 +0.1
157,646 + GFF3800 0.28 +0.6
157,646 + GFF3800 0.28 +0.3
157,646 + GFF3800 0.28 +1.1
157,646 + GFF3800 0.28 +0.0
157,647 - GFF3800 0.28 +0.4
157,647 - GFF3800 0.28 +1.0
157,658 + GFF3800 0.29 +0.9
157,658 + GFF3800 0.29 +0.9
157,658 + GFF3800 0.29 +1.6
157,659 - GFF3800 0.29 +0.6
157,659 - GFF3800 0.29 +0.6
157,659 - GFF3800 0.29 +0.9
157,659 - GFF3800 0.29 +0.9
157,734 - GFF3800 0.35 +0.8
157,746 - GFF3800 0.35 +0.1
157,850 + GFF3800 0.44 +1.0
157,884 - GFF3800 0.46 +0.2
157,884 - GFF3800 0.46 +0.1
157,946 + GFF3800 0.51 +0.7
157,947 - GFF3800 0.51 +0.8
157,947 - GFF3800 0.51 -0.9
157,947 - GFF3800 0.51 +1.3
157,988 + GFF3800 0.54 +0.4
157,988 + GFF3800 0.54 +1.3
157,989 - GFF3800 0.54 +0.2
157,989 - GFF3800 0.54 +0.4
157,989 - GFF3800 0.54 +0.5
157,994 + GFF3800 0.55 +1.0
157,994 + GFF3800 0.55 +0.5
157,995 - GFF3800 0.55 +0.4
158,198 + GFF3800 0.71 -0.3
158,205 - GFF3800 0.71 +0.0

Or see this region's nucleotide sequence