Strain Fitness in Xanthobacter sp. DMC5 around GFF3784

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3783 and GFF3784 are separated by 158 nucleotidesGFF3784 and GFF3785 are separated by 75 nucleotides GFF3783 - Nitrogen fixation regulation protein FixK, at 133,342 to 134,097 GFF3783 GFF3784 - Oxygen-independent coproporphyrinogen III oxidase, at 134,256 to 135,647 GFF3784 GFF3785 - Beta-barrel assembly-enhancing protease, at 135,723 to 139,271 GFF3785 Position (kb) 134 135 136Strain fitness (log2 ratio) -1 0 1at 133.267 kb on + strandat 133.268 kb on - strandat 133.268 kb on - strandat 133.378 kb on + strandat 133.396 kb on + strandat 133.516 kb on + strand, within GFF3783at 133.536 kb on - strand, within GFF3783at 133.567 kb on + strand, within GFF3783at 133.567 kb on + strand, within GFF3783at 134.146 kb on + strandat 134.147 kb on - strandat 134.147 kb on - strandat 134.147 kb on - strandat 134.632 kb on + strand, within GFF3784at 134.632 kb on + strand, within GFF3784at 134.633 kb on - strand, within GFF3784at 134.633 kb on - strand, within GFF3784at 134.701 kb on + strand, within GFF3784at 134.701 kb on + strand, within GFF3784at 134.701 kb on + strand, within GFF3784at 134.701 kb on + strand, within GFF3784at 134.702 kb on - strand, within GFF3784at 134.702 kb on - strand, within GFF3784at 135.004 kb on + strand, within GFF3784at 135.004 kb on + strand, within GFF3784at 135.004 kb on + strand, within GFF3784at 135.005 kb on - strand, within GFF3784at 135.201 kb on + strand, within GFF3784at 135.388 kb on + strand, within GFF3784at 135.389 kb on - strand, within GFF3784at 135.439 kb on + strand, within GFF3784at 135.475 kb on + strand, within GFF3784at 135.476 kb on - strand, within GFF3784at 135.523 kb on + strandat 135.524 kb on - strandat 135.618 kb on - strandat 135.728 kb on - strandat 135.791 kb on - strandat 135.791 kb on - strandat 135.829 kb on + strandat 135.830 kb on - strandat 135.850 kb on + strandat 135.898 kb on + strandat 135.931 kb on + strandat 135.931 kb on + strandat 135.932 kb on - strandat 135.932 kb on - strandat 135.932 kb on - strandat 135.932 kb on - strandat 136.036 kb on + strandat 136.036 kb on + strandat 136.037 kb on - strandat 136.045 kb on + strandat 136.046 kb on - strandat 136.046 kb on - strandat 136.046 kb on - strandat 136.108 kb on + strand, within GFF3785at 136.108 kb on + strand, within GFF3785at 136.109 kb on - strand, within GFF3785at 136.162 kb on + strand, within GFF3785at 136.162 kb on + strand, within GFF3785at 136.162 kb on + strand, within GFF3785at 136.162 kb on + strand, within GFF3785at 136.179 kb on + strand, within GFF3785at 136.179 kb on + strand, within GFF3785at 136.180 kb on - strand, within GFF3785at 136.180 kb on - strand, within GFF3785at 136.264 kb on + strand, within GFF3785at 136.265 kb on - strand, within GFF3785at 136.265 kb on - strand, within GFF3785at 136.265 kb on - strand, within GFF3785at 136.399 kb on + strand, within GFF3785at 136.400 kb on - strand, within GFF3785at 136.400 kb on - strand, within GFF3785at 136.400 kb on - strand, within GFF3785at 136.400 kb on - strand, within GFF3785at 136.429 kb on + strand, within GFF3785at 136.429 kb on + strand, within GFF3785at 136.430 kb on - strand, within GFF3785at 136.444 kb on + strand, within GFF3785at 136.444 kb on + strand, within GFF3785at 136.444 kb on + strand, within GFF3785at 136.444 kb on + strand, within GFF3785at 136.445 kb on - strand, within GFF3785at 136.445 kb on - strand, within GFF3785at 136.445 kb on - strand, within GFF3785at 136.445 kb on - strand, within GFF3785at 136.499 kb on - strand, within GFF3785at 136.499 kb on - strand, within GFF3785at 136.555 kb on + strand, within GFF3785at 136.579 kb on + strand, within GFF3785at 136.579 kb on + strand, within GFF3785at 136.609 kb on - strand, within GFF3785

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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133,267 + -1.2
133,268 - +0.3
133,268 - +0.5
133,378 + -0.2
133,396 + -0.1
133,516 + GFF3783 0.23 -0.1
133,536 - GFF3783 0.26 +0.1
133,567 + GFF3783 0.30 -0.4
133,567 + GFF3783 0.30 +0.3
134,146 + -0.2
134,147 - +1.6
134,147 - -0.6
134,147 - +1.4
134,632 + GFF3784 0.27 +0.5
134,632 + GFF3784 0.27 -0.7
134,633 - GFF3784 0.27 -0.7
134,633 - GFF3784 0.27 +1.1
134,701 + GFF3784 0.32 +0.1
134,701 + GFF3784 0.32 -0.9
134,701 + GFF3784 0.32 -0.9
134,701 + GFF3784 0.32 +0.3
134,702 - GFF3784 0.32 +0.8
134,702 - GFF3784 0.32 -0.0
135,004 + GFF3784 0.54 +0.4
135,004 + GFF3784 0.54 -1.2
135,004 + GFF3784 0.54 -0.2
135,005 - GFF3784 0.54 +0.3
135,201 + GFF3784 0.68 +0.4
135,388 + GFF3784 0.81 +0.6
135,389 - GFF3784 0.81 -0.4
135,439 + GFF3784 0.85 -0.3
135,475 + GFF3784 0.88 +0.5
135,476 - GFF3784 0.88 -0.3
135,523 + -0.1
135,524 - -1.2
135,618 - +0.2
135,728 - +0.8
135,791 - -1.3
135,791 - -0.8
135,829 + +0.4
135,830 - -0.9
135,850 + +0.1
135,898 + +0.9
135,931 + +0.3
135,931 + +0.5
135,932 - +0.3
135,932 - +1.2
135,932 - -1.5
135,932 - +0.3
136,036 + +0.1
136,036 + +0.1
136,037 - -1.3
136,045 + -0.2
136,046 - -0.4
136,046 - -1.6
136,046 - +0.5
136,108 + GFF3785 0.11 -0.0
136,108 + GFF3785 0.11 -0.1
136,109 - GFF3785 0.11 +1.1
136,162 + GFF3785 0.12 +0.0
136,162 + GFF3785 0.12 -0.3
136,162 + GFF3785 0.12 -1.0
136,162 + GFF3785 0.12 +1.5
136,179 + GFF3785 0.13 +0.4
136,179 + GFF3785 0.13 -0.1
136,180 - GFF3785 0.13 +0.2
136,180 - GFF3785 0.13 -0.2
136,264 + GFF3785 0.15 -0.7
136,265 - GFF3785 0.15 -0.4
136,265 - GFF3785 0.15 +0.2
136,265 - GFF3785 0.15 +0.6
136,399 + GFF3785 0.19 -1.5
136,400 - GFF3785 0.19 +0.4
136,400 - GFF3785 0.19 +0.3
136,400 - GFF3785 0.19 +0.5
136,400 - GFF3785 0.19 -0.8
136,429 + GFF3785 0.20 +0.5
136,429 + GFF3785 0.20 +0.5
136,430 - GFF3785 0.20 +0.8
136,444 + GFF3785 0.20 -0.5
136,444 + GFF3785 0.20 +0.9
136,444 + GFF3785 0.20 -1.7
136,444 + GFF3785 0.20 +1.1
136,445 - GFF3785 0.20 -0.2
136,445 - GFF3785 0.20 -0.3
136,445 - GFF3785 0.20 -0.6
136,445 - GFF3785 0.20 -0.2
136,499 - GFF3785 0.22 +0.4
136,499 - GFF3785 0.22 +0.7
136,555 + GFF3785 0.23 +0.2
136,579 + GFF3785 0.24 +0.3
136,579 + GFF3785 0.24 -0.1
136,609 - GFF3785 0.25 +0.3

Or see this region's nucleotide sequence