Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3779 and GFF3780 are separated by 97 nucleotides GFF3780 and GFF3781 are separated by 139 nucleotides GFF3781 and GFF3782 overlap by 8 nucleotides
GFF3779 - Peptidyl-lysine N-acetyltransferase PatZ, at 127,747 to 130,455
GFF3779
GFF3780 - Transcriptional regulatory protein FixJ, at 130,553 to 130,942
GFF3780
GFF3781 - Transcriptional regulatory protein FixJ, at 131,082 to 131,720
GFF3781
GFF3782 - Adaptive-response sensory-kinase SasA, at 131,713 to 133,158
GFF3782
Position (kb) 131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.278 kb on - strand at 130.827 kb on + strand, within GFF3780 at 130.827 kb on + strand, within GFF3780 at 130.827 kb on + strand, within GFF3780 at 130.828 kb on - strand, within GFF3780 at 130.828 kb on - strand, within GFF3780 at 130.828 kb on - strand, within GFF3780 at 130.828 kb on - strand, within GFF3780 at 130.904 kb on - strand at 131.000 kb on - strand at 131.030 kb on + strand at 131.031 kb on - strand at 131.074 kb on + strand at 131.176 kb on + strand, within GFF3781 at 131.212 kb on + strand, within GFF3781 at 131.213 kb on - strand, within GFF3781 at 132.092 kb on + strand, within GFF3782 at 132.092 kb on + strand, within GFF3782 at 132.335 kb on + strand, within GFF3782 at 132.623 kb on + strand, within GFF3782 at 132.635 kb on + strand, within GFF3782 at 132.636 kb on - strand, within GFF3782
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 130,278 - -0.1 130,827 + GFF3780 0.70 -0.0 130,827 + GFF3780 0.70 -0.7 130,827 + GFF3780 0.70 +0.4 130,828 - GFF3780 0.71 +0.3 130,828 - GFF3780 0.71 -0.9 130,828 - GFF3780 0.71 +2.6 130,828 - GFF3780 0.71 +1.0 130,904 - -0.4 131,000 - -0.9 131,030 + -0.5 131,031 - -0.5 131,074 + +0.8 131,176 + GFF3781 0.15 -1.2 131,212 + GFF3781 0.20 -2.2 131,213 - GFF3781 0.21 -0.6 132,092 + GFF3782 0.26 -1.0 132,092 + GFF3782 0.26 -0.2 132,335 + GFF3782 0.43 +0.1 132,623 + GFF3782 0.63 -0.2 132,635 + GFF3782 0.64 +0.2 132,636 - GFF3782 0.64 -0.4
Or see this region's nucleotide sequence