Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3768 and GFF3769 are separated by 16 nucleotides GFF3769 and GFF3770 are separated by 219 nucleotides GFF3770 and GFF3771 are separated by 115 nucleotides
GFF3768 - hypothetical protein, at 114,460 to 115,500
GFF3768
GFF3769 - D-beta-hydroxybutyrate dehydrogenase, at 115,517 to 116,299
GFF3769
GFF3770 - hypothetical protein, at 116,519 to 117,058
GFF3770
GFF3771 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 117,174 to 118,502
GFF3771
Position (kb) 115
116
117 Strain fitness (log2 ratio) -1
0
1 at 114.777 kb on + strand, within GFF3768 at 114.872 kb on + strand, within GFF3768 at 114.902 kb on + strand, within GFF3768 at 114.903 kb on - strand, within GFF3768 at 115.026 kb on + strand, within GFF3768 at 115.027 kb on - strand, within GFF3768 at 115.181 kb on + strand, within GFF3768 at 115.740 kb on + strand, within GFF3769 at 115.740 kb on + strand, within GFF3769 at 115.836 kb on + strand, within GFF3769 at 115.836 kb on + strand, within GFF3769 at 115.837 kb on - strand, within GFF3769 at 115.837 kb on - strand, within GFF3769 at 116.044 kb on + strand, within GFF3769 at 116.045 kb on - strand, within GFF3769 at 116.173 kb on - strand, within GFF3769 at 116.241 kb on + strand at 116.685 kb on - strand, within GFF3770 at 116.804 kb on + strand, within GFF3770 at 116.804 kb on + strand, within GFF3770 at 117.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 114,777 + GFF3768 0.30 -0.1 114,872 + GFF3768 0.40 +0.3 114,902 + GFF3768 0.42 +0.9 114,903 - GFF3768 0.43 -0.4 115,026 + GFF3768 0.54 +0.4 115,027 - GFF3768 0.54 +0.2 115,181 + GFF3768 0.69 -0.4 115,740 + GFF3769 0.28 +1.6 115,740 + GFF3769 0.28 -0.5 115,836 + GFF3769 0.41 -0.4 115,836 + GFF3769 0.41 +1.3 115,837 - GFF3769 0.41 +0.3 115,837 - GFF3769 0.41 +1.2 116,044 + GFF3769 0.67 -1.1 116,045 - GFF3769 0.67 -1.5 116,173 - GFF3769 0.84 -0.3 116,241 + -0.3 116,685 - GFF3770 0.31 +0.4 116,804 + GFF3770 0.53 -0.4 116,804 + GFF3770 0.53 -0.2 117,136 + -1.0
Or see this region's nucleotide sequence