Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3709 and GFF3710 are separated by 1 nucleotides GFF3710 and GFF3711 overlap by 4 nucleotides GFF3711 and GFF3712 are separated by 283 nucleotides
GFF3709 - Bifunctional coenzyme PQQ synthesis protein C/D, at 51,924 to 52,199
GFF3709
GFF3710 - Bifunctional coenzyme PQQ synthesis protein C/D, at 52,201 to 53,022
GFF3710
GFF3711 - Coenzyme PQQ synthesis protein B, at 53,019 to 53,918
GFF3711
GFF3712 - Response regulator MprA, at 54,202 to 54,897
GFF3712
Position (kb) 53
54 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.265 kb on + strand at 52.266 kb on - strand at 52.274 kb on + strand at 52.275 kb on - strand at 52.313 kb on + strand, within GFF3710 at 52.373 kb on + strand, within GFF3710 at 52.373 kb on + strand, within GFF3710 at 52.427 kb on + strand, within GFF3710 at 52.428 kb on - strand, within GFF3710 at 52.440 kb on - strand, within GFF3710 at 52.457 kb on + strand, within GFF3710 at 52.457 kb on + strand, within GFF3710 at 52.458 kb on - strand, within GFF3710 at 52.479 kb on + strand, within GFF3710 at 52.479 kb on + strand, within GFF3710 at 52.568 kb on + strand, within GFF3710 at 52.568 kb on + strand, within GFF3710 at 52.568 kb on + strand, within GFF3710 at 52.568 kb on + strand, within GFF3710 at 52.622 kb on + strand, within GFF3710 at 52.622 kb on + strand, within GFF3710 at 52.623 kb on - strand, within GFF3710 at 52.794 kb on - strand, within GFF3710 at 52.860 kb on + strand, within GFF3710 at 52.861 kb on - strand, within GFF3710 at 52.861 kb on - strand, within GFF3710 at 53.022 kb on + strand at 53.023 kb on - strand at 53.023 kb on - strand at 53.123 kb on + strand, within GFF3711 at 53.344 kb on + strand, within GFF3711 at 53.345 kb on - strand, within GFF3711 at 53.376 kb on + strand, within GFF3711 at 53.377 kb on - strand, within GFF3711 at 53.377 kb on - strand, within GFF3711 at 53.377 kb on - strand, within GFF3711 at 53.377 kb on - strand, within GFF3711 at 53.593 kb on + strand, within GFF3711 at 53.594 kb on - strand, within GFF3711 at 53.594 kb on - strand, within GFF3711 at 53.637 kb on + strand, within GFF3711 at 53.638 kb on - strand, within GFF3711 at 53.764 kb on - strand, within GFF3711 at 53.988 kb on + strand at 54.081 kb on + strand at 54.308 kb on + strand, within GFF3712 at 54.317 kb on + strand, within GFF3712 at 54.317 kb on + strand, within GFF3712 at 54.318 kb on - strand, within GFF3712 at 54.605 kb on + strand, within GFF3712 at 54.605 kb on + strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.606 kb on - strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.770 kb on + strand, within GFF3712 at 54.771 kb on - strand, within GFF3712 at 54.771 kb on - strand, within GFF3712
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 52,265 + -0.7 52,266 - +1.3 52,274 + +1.7 52,275 - +0.3 52,313 + GFF3710 0.14 +1.4 52,373 + GFF3710 0.21 +1.4 52,373 + GFF3710 0.21 +1.5 52,427 + GFF3710 0.27 +0.6 52,428 - GFF3710 0.28 +1.0 52,440 - GFF3710 0.29 +2.2 52,457 + GFF3710 0.31 +0.6 52,457 + GFF3710 0.31 +0.9 52,458 - GFF3710 0.31 +0.7 52,479 + GFF3710 0.34 +1.0 52,479 + GFF3710 0.34 +0.9 52,568 + GFF3710 0.45 +0.7 52,568 + GFF3710 0.45 +0.6 52,568 + GFF3710 0.45 +0.6 52,568 + GFF3710 0.45 +1.3 52,622 + GFF3710 0.51 +0.8 52,622 + GFF3710 0.51 +0.1 52,623 - GFF3710 0.51 +0.7 52,794 - GFF3710 0.72 +1.7 52,860 + GFF3710 0.80 +1.6 52,861 - GFF3710 0.80 +0.7 52,861 - GFF3710 0.80 +1.4 53,022 + +1.1 53,023 - +0.2 53,023 - +0.2 53,123 + GFF3711 0.12 +1.2 53,344 + GFF3711 0.36 +0.3 53,345 - GFF3711 0.36 +0.8 53,376 + GFF3711 0.40 +1.1 53,377 - GFF3711 0.40 +1.4 53,377 - GFF3711 0.40 +0.2 53,377 - GFF3711 0.40 +0.6 53,377 - GFF3711 0.40 +1.0 53,593 + GFF3711 0.64 +0.6 53,594 - GFF3711 0.64 +0.2 53,594 - GFF3711 0.64 +1.0 53,637 + GFF3711 0.69 +0.3 53,638 - GFF3711 0.69 +0.6 53,764 - GFF3711 0.83 +1.2 53,988 + +1.0 54,081 + +1.8 54,308 + GFF3712 0.15 +0.9 54,317 + GFF3712 0.17 +0.6 54,317 + GFF3712 0.17 +1.1 54,318 - GFF3712 0.17 +1.5 54,605 + GFF3712 0.58 -0.3 54,605 + GFF3712 0.58 -1.8 54,606 - GFF3712 0.58 +0.6 54,606 - GFF3712 0.58 +1.1 54,606 - GFF3712 0.58 +0.4 54,606 - GFF3712 0.58 +0.4 54,606 - GFF3712 0.58 +1.3 54,770 + GFF3712 0.82 +0.6 54,770 + GFF3712 0.82 +0.6 54,770 + GFF3712 0.82 +0.1 54,771 - GFF3712 0.82 +0.3 54,771 - GFF3712 0.82 +1.5
Or see this region's nucleotide sequence